Gene detail

Gene detail information of Glyur000709s00024188

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15410.2	0	Cyclic nucleotide-regulated ion channel family protein
NR	XP_004491863.1	0	PREDICTED: cyclic nucleotide-gated ion channel 2-like [Cicer arietinum]
COG	YP_006439308.1	1.00E-23	putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
Swissprot	tr\|O65718\|CNGC2_ARATH	0	Cyclic nucleotide-gated ion channel 2
trEMBL	tr\|I1N4H5\|I1N4H5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G49890.1}

Sequence

Transcript Sequence

>Glyur000709s00024188.1
TGGAGTTTTGAGGGGAAGAAAAGTTGCCGGATTCAAGTGATGTGACAGAGAAACCTCATGATTAGCTAAAATACAGAATACAGATAATCGATGAGAGGGAAGACACGATCATTTGAATCCCCTAATAAATTCGCACACACCGTCTTGATCGAACCGGAGTGTGAATGAACAATTATTCGCGAAAACTAAAAGGGAGGTTATCCACAGAACATGATTCATGCTACTGTGCTGCAGTGTTGAAGATAAGAAGACAGAAGAGAAAAAAAAATAAAAAATAAAAAAAGGGAAAGAGAGAGAGAAAGAGGTTGGGAAGGAGCAGAAATAGCCAAGCAAAAACAAGAGTGGTCCCCGAGGGTGATAGAAAACGGCAAAAGAGTGAAGAGCAGAGAGTGGAACGTAAACACACACGGACACACTGAACAACAACCCCACCACACACTCTCTCCTCACACACGAGAGAGAGAGAGCATCAACCCTACGTTGCGTAACCGTAAGCACCAGTTCCCCCCCGTCACATGCAAAGTAGTAGTACTCTACTCATCCCCTTCCCCTCACTTCATCCCCATGATCTTATATACTCTTTCTTCCCCCAACTACACCACACCATGTGCTCTTCCCTCTCACCCTCTTCCATGTAATTTTAATTTCCCCCNAATAACACCTTCCTCCTCCTCCTCTCCCATGGTTAATGTTACTCTCCATCATCAACCATGCCCACCTTCTCCTCTCTCCTTAGGTGGATTGGTCTGGGGAGGAATCCTCGGAATACAATCAACAACGTCGGAGACAGCAGCAGCGAAGCTGGTGCCGCTGCTACAGTAACGGATAATGATAGTCCAATCACCAGCGCGGTGGAGTGTTACGCGTGCACACAGGTGGGTGTGCCCGTGTTCCACTCCACCAGCTGTGACAGCTGTCACCAGCCCCAGTGGGAGGCGTCCGCGGGCTCCTACTTGGTTCCAATCCAGAACCGGCCCGGGAAGGTCGCGAGGGCGGTTTCCTGGGCGAATTCGGGCCCGTTCGGGTCGGTTTTGGACCCGAGGAGCAAGCGCGTGCAGGCGTGGAACCGGGCGTTGCTTTTGGCGCGTGGGGTGGCGCTGGCAATCGACCCGCTGTTCTTCTACGCGCTGTCGATAGGGAGGGAGGGGTCGCCGTGTCTGTACATGGACGGGGGGCTTGCGGCGATGGTGACGGTGGCGCGGACGTGCGTGGACGCGGTGCACCTGATTCACGTGTGGCTGCAGTTCAGGCTTGCGTACGTGTCGAGGGAGTCGCTGGTAGTTGGGTGCGGGAAGCTCGTGTGGGACGCACGTGCCATCGCTTCCCATTACCTCAGATCCTTCAAGGGCTTCTGGTTCGATGCCTTCGTCATTCTTCCCGTGCCGCAGGTTGTGTTTTGGCTAGTAGTACCGAAATTGATAAGAGAAGAGCGGATTAAAATCATTATGACCACAATGCTATTAATTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGCTTTGGCCTCAACCTCATAGCTTATTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAACGCGTTGCATCATGTCTCAGGCAGCAGTGTGAAAGAACTCATGGATGCAATCTCTCTCTGTCATGCTCAGAGGAGGTATGCTACCAGTCTTTGTTACCACCAGGCACTATTGGAAATCCATGTGGGGGNAACTCAACAGTAGTGGTAAGAAAGCCTTTGTGCTTAGATGTTCAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCCAGCAACTCCTTGGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATCGTACTCAGTGGACTACTGCTTTTCACTTTGTTGATTGGTAACATTCAGGTATTCTTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGCCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCCCGGTTAAGGCAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCAGCCATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGACTGAGGAGGGACATCAAGCGCTATCTTTGCCTGGACCTCATCAAAAAAGTACCTCTATTCCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCCCTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATTGTTCGCGGACGCATAAAAAGAAACCAAACTCTCAGCAAAGGCATGGTAGCCTCTAGTGTCCTTGAACCAGGAGGTTTTTTGGGTGATGAACTACTTTCTTGGTGCCTTCGCCGCCCGTTTATAGACAGGCTTCCGGCCTCCTCGGCCACATTTGTGTGTCTTGAATCAACAGAAGCATTTGGCCTTGATGCAAACCACTTGAGGTACATAACTGATCACTTCCGCTACAAATTTGCCAATGAGAGGCTAAAGAGAACAGCAAGATACTACTCATCCAATTGGAGAACCTGGGCCGCTGTCAACATCCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACCCCTGTAAGAGACAATGGAGGCACTGAACGCAGGCTCTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGAAAGTCAGTGTCCATGTTTGGTTTTGTTTTTATTTTGATTTGAGAATTACAAGAAACACACTNTTTTCAACATACTCTTTACGATTGATTGAAATTTAAGTGGGTCTCACTATTTTGGGAATGAGTTTCGTCAAATAGGATATGAGATCCACTTAAATTTCANCCAACCATAAAGAATGTGTTGAAAAATAATGTGTTAAAGAGTATGTTGCTGGTACTCCTCGATTCGAGAAATTATTTTCTTTGTTTCAGATCGTCAATAAATTTCTGTCTCATCAAGTCTATCAGACCTTTGAAATTTCTATAAAGTCATGAAATCATTCATGAAATGTATAAAAGACAGAGAAAATGAGCAAGAGTAATTGAGAAATCATTGAATTCCCGTTTGTTCATTTTTTTACTATATGGTTTGCCGGAAGGAATTTGTTATGGGATTGGTGTCTTGAACAATTCCATGTTGAGGCTGCTATGTGCTTGACGAAAAAATGAATGAAGGGTACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00709	94490	102787	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000709s00024188.1	PF00027.24	cNMP_binding	543	635	5.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.073
SRR1783600	control	55.088
SRR1783602	moderate drought stress	99.208
SRR1811619	moderate drought stress	99.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	85.275
DRR006520	Root Summer glycyrrhizin high producing strain	84.386
DRR006521	Root Winter glycyrrhizin high producing strain	0.580
DRR006522	Root Winter glycyrrhizin high producing strain	0.499
DRR006523	Root Summer glycyrrhizin low producing strain	44.561
DRR006524	Root Summer glycyrrhizin low producing strain	43.983
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.568
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.337

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.972
SRR2868004	Drought Stress (root)	2.602
SRR2967015	Control (root)	2.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.403
SRR9715740	Leaf	26.824
SRR9715741	Leaf	30.200
SRR9715739	Root	16.381
SRR9715742	Root	46.388
SRR9715743	Root	39.732

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.240
SRR8749028	MeJA induced 9h	0.136
SRR8749029	MeJA induced 9h	0.127
SRR8749030	Uninduced	0.107
SRR8749031	Uninduced	0.167
SRR8749032	Uninduced	0.243

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.218
SRR8400027	Control - Root	7.083