Gene detail

Gene detail information of Glyur000709s00024183

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G15450.1	casein lytic proteinase B3
NR	XP_004491878.1	PREDICTED: chaperone protein ClpB3, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_007121403.1	ATP-dependent chaperone ClpB [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q9LF37\|CLPB3_ARATH	Chaperone protein ClpB3, chloroplastic (Precursor)
trEMBL	tr\|I1N4I0\|I1N4I0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G49930.1}

Sequence

Transcript Sequence

>Glyur000709s00024183.1
TCCTTGGATTGCACACACATTCTTTTCTCAATAGCCACGCAAAACACACAATTGTAGGTTCCTTCCTTCTTCAATTCTCAGTTTGTCACTCTTCTTAATCAGTTAATTGATCTCACTCTCTCTTCCCCGCAACACCAGCAATTAAACCTTCGATCTCAGCTATGGCTTCTACGACGTCNTTTTCTCTTCCCCACGCAGTTCCCATCTCCTGCCACGGAAACCGTGCTCGGTTTTCTCAGCCCCACCTCTTCTCCCTCCCCTTCTCTGCGAAACCCATTTCCCTCAAATCGCTTCCCTTGATCCAAAGGAACCTTCTTTCAAATGGGTTTCACGGAATTCAAAGAAAAAATCCCACGCGTTTCTCTGTTCGCTGTGAAGCTTCAAGTGGAAGGATTACACAGCAAGAGTTCACAGAGATGGCCTGGCAGTCGATAGTTTCGTCACCAGAGGTGGCCAAGGAGAACAAGCATCAAATTGTGGAGACAGAGCACTTGATGAAGGCTTTGTTGGAGCAGAAGAATGGGCTTGCTCGCAGGATCTTTTCCAAGCTTGGGGTGGATAACACTCGGCTTCTAGAAGCTACTGATAAGTACATTCAGCGGCAACCTAAGATTCTAGGGGAATCGGCTGGTTCAATGTTGGGGCGCGATTTGGAGGCATTGATTCAGAGAGCCAGGGACTACAAGAAAGAATATGGGGATTCATTTGTTTCAGTTGAGCATTTGGTTCTTGGTTTTGCCCAAGATCAACGATTCGGGAAGCAGTTGTTTAGAGATTTTCAAATATCTCAGCAGGCTCTAAAATCTGCAATAGAGTCCATTAGGGGACGCCAATCAGTTATTGACCAAGATCCTGAAGGGAAGTATGAAGCCTTGGAAAAATATGGAAAAGATTTGACAGCAATGGCCAAAGCAGGAAAACTTGACCCAGTCATAGGAAGGGATGATGAAATACGCAGGTGCATCCAAATTCTCTCCAGGAGAACAAAGAACAATCCTGTGCTGATTGGTGAGCCTGGTGTTGGAAAGACTGCAATTTCTGAAGGACTTGCTCAGAGAATCGTGCAAGGTGATGTTCCTCAAGCTTTGATGAACCGTAAGCTTATATCCCTTGATATGGGTGCACTTATTGCTGGAGCAAAATACCGAGGAGAATTTGAGGATAGGCTGAAAGCTGTTCTTAAAGAAGTAACAGAATCCGATGGTCAGACCATCCTTTTCATTGATGAGATTCATACAGTTGTTGGGGCAGGTGCTACAAATGGTGCTATGGATGCTGGTAATCTCTTAAAGCCTATGCTTGGTCGGGGGGAGCTGCGATGTATTGGTGCAACAACACTAGATGAGTATCGAAAGTATATNGAGAAGGATCCAGCACTAGAGCGTCGTTTCCAGCAAGTTTATGTAGACCAACCTACTGTTGAAGATACCGTTTCAATACTAAGGGGACTGCGGGAAAGGTATGAGCTACATCATGGAGTCCGGATTTCTGACAGTGCACTTGTGGATGCTGCAATTCTCTCAGATCGATATATCAGTGGGAGATTTTTGCCAGACAAAGCTATTGATTTGGTTGATGAGGCAGCTGCCAAATTGAAAATGGAAATCACTTCGAAACCTACTGCACTCGATGAGATCAATCGGTCAGTCCTGAAACTAGAGATGGAGAGACTCTCTCTCANGAATGATACAGACAAGGCTTCTAAAGATAGGCTGAATCGTCTTGAGGCAGAGCTCTCTCTCTTAAAAGAGAAACAGGTTGAGCTGACCGAACAGTGGGAGCATGAAAAGTCTGTAATGACTCGCATTCAATCAATCAAAGAAGAGATAGACAGGGTGAATCTAGAGATCCAACAAGCTGAGCGGGAGTATGATCTTAATCGTGCTGCTGAATTAAAGTATGGCAGCCTAAACTCCTTGCAACGACAACTTGAAAGTGCAGAGAAGGAGTTGGATGAATATATGCGTTCTGGGAAGTCTATGCTGAGGGAGGAAGTTACCGGAAACGATATTGCTGAAATTGTAAGCAAGTGGACCGGTATCCCTGTATCAAAACTTCAACAATCAGAGAGGGAGAAGTTGTTGTATTTAGAGGAAGTGCTTCATAAGCGTGTCGTGGGTCAAGACCCTGCTGTTAAGGCAGTTGCCGAGGCTATCCAANGATCAAGGGCAGGTCTTTCAGATCCTCACCGTCCAATTGCCAGCTTCATGTTCATGGGACCTACGGGTGTAGGAAAGACGGAGCTGGCTAAGGCACTTGCTTCCTACATGTTCAATACAGAGGAAGCACTTGTCCGAATCGATATGAGCGAGTACATGGAAAAGCATGCAGTTTCAAGATTGATTGGGGCACCACCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTTACCGAGACAGTTCGCCGCAGACCNTATGCNGTTATTTTGTTNGATGAGATTGAGAAGGCACACTCGGATGTCTTCAACGTGTTCCTTCAGATTTTGGATGATGGAAGAGTAACTGACTCACAGGGTCGAACAGTGAGTTTTACCAACACTGTTATCATTATGACCTCAAATGTTGGGTCTCAGTACATTCTCAACACAGATGACGACACTGTGCCTAAAGAGTTAACTTATGAAACCATAAAGCAGCGGGTAATGGATGCTGCAAGATCCATATTTCGCCCTGAGTTCATGAATAGAGTTGATGAGTATATTGTTTTCCAGCCTCTAGACCGTGACCAAATAAATAGCATTGTCAAGTTACAGTTGGAGCGTGTGCAGAAGAGAATAGCAGATCGTAAGATGAACATCCGTGTGACAGATGCTGCCATCCAACTTCTTGGNAGTCTGGGGTATGACCCGAACTATGGGGCTAGGCCAGTCAAGCGAGTGATTCAGCAAAATGTGGAGAATGAACTTGCCAAGGGTATTCTGAGAGGAGAATTTAAGGATGAGGACACAATTTTAGTAGACACAGAACTCTCAGCATTTTCCAATGGTCAACTTCCCCAGCAAAAGCTAGTTTTTAGGAAGCTTGAAGCTGCTGATTCACAATCCACCACTCAAGACAGTCTGGAACCCTTTCCACAGGCTCCCTGAAATGCCTTCTACTGCTCCTTATTTCTCAGCATTCTAAGTTAAGTTTCACACTCGAGTATATATACCAACTGAACAATGATCTCGGCCTAGTTTCGTCGAATATTTAATTAAGTTTTTTTATTAATCAGTCAATAAGAATACCATACATGACAAAGTAGCACATTTGTCACTCGAAAGCAGTGTAAATATATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00709	66458	72697	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009408 response to heat

GO:0016485 protein processing

GO:0019538 protein metabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000709s00024183.1	PF02861.15	Clp_N	96	145	3.20E-15
Glyur000709s00024183.1	PF02861.15	Clp_N	171	222	4.10E-11
Glyur000709s00024183.1	PF00004.24	AAA	280	412	1.30E-13
Glyur000709s00024183.1	PF07724.9	AAA_2	677	845	8.30E-55
Glyur000709s00024183.1	PF10431.4	ClpB_D2-small	852	931	2.60E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.443
SRR1783600	control	11.402
SRR1783602	moderate drought stress	17.825
SRR1811619	moderate drought stress	17.620

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.884
DRR006520	Root Summer glycyrrhizin high producing strain	17.729
DRR006521	Root Winter glycyrrhizin high producing strain	20.647
DRR006522	Root Winter glycyrrhizin high producing strain	20.152
DRR006523	Root Summer glycyrrhizin low producing strain	20.889
DRR006524	Root Summer glycyrrhizin low producing strain	20.464
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.813
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.702

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.102
SRR2868004	Drought Stress (root)	11.095
SRR2967015	Control (root)	10.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.470
SRR9715740	Leaf	20.849
SRR9715741	Leaf	14.257
SRR9715739	Root	6.734
SRR9715742	Root	18.376
SRR9715743	Root	15.515

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.901
SRR8749028	MeJA induced 9h	5.614
SRR8749029	MeJA induced 9h	3.704
SRR8749030	Uninduced	6.183
SRR8749031	Uninduced	2.959
SRR8749032	Uninduced	2.631

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.713
SRR8400027	Control - Root	12.112