Gene detail

Gene detail information of Glyur000709s00024181

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15460.2	3.00E-34	membrane-anchored ubiquitin-fold protein 2
NR	XP_007139506.1	1.06E-69	hypothetical protein PHAVU_008G035500g [Phaseolus vulgaris]
Swissprot	tr\|Q75GT2\|MUB1_ORYSJ	9.00E-49	Membrane-anchored ubiquitin-fold protein 1 (Precursor)
trEMBL	tr\|V7B1Q5\|V7B1Q5_PHAVU	4.00E-70	Uncharacterized protein {ECO:0000313\|EMBL:ESW11500.1}

Sequence

Transcript Sequence

>Glyur000709s00024181.1
ACTTTCTCCTCTTTTTCTCCTTCTCCTTCTTCTTCCTTCCATNTAGGTTTCTGAAAACAAATCCCTGTGACTCCCACAATTACCACTCAGATCAGTGGCAACTCAGANACACAAATAAGAAGAAAAAAATAATGAAAAATTTCAGAACACAAGAGTGATTGCCCTTGAAAGAAATCCTGTTATTCACTAATTAAACTCAATTGAAGTGATTCACTGGAAAACTCCTTCATAGCCTTTGAGGTACAAACTGAAGCTATTAGATTTCTTTTAACTTCACGAGTTCCTTGGATCTCTAAGCATGGCTGGGAATCAAGATCAGTTTGAGATCAAGTTTAGGTTGACTGATGATTCTGATATTGGCCCCAAAAGTTTTCCTGCTGCTACTAGTATTGCAACATTGAAAGAAAGTATTCTTGCTCAGTGGCCAAAAGATAAGGAGAATGGCCCAAGGACTATAAAAGACATGAAGTTAATTAGCGCAGGAAAAATATTGGAGAACAACAGAACAGTTGGGGAATGCCAGAGCCCATTATGTGATGCCCCGGGTACAGTTACGACGATGCTTGTGGTTGTGCAACCACCTACTACGGAGAAAGAGAAGAAAGCTGCAAACGAAGCAAAACAGCACAAATGTGGTTGTGTTATTTTATAACATCCAGATTGAATAGCAAATGTCATCTTTCTTAGGTGGTTAGGGACACTTCATTTTCACATAATCTTCTGTGGCTTTCAAAGGTTTCCCTCATACAAACAAATTATTTGGTTGCATGCCTCACTCTTACTACAGGCAAAAAAGAGTACTTGACTTGGTGGAGAGAGATTGTGATTTGTGAAGCTACTAGTAGTTCTCTGATTTCTCTGCTGCGGCAAATTTCTTATACAGTTTTCCATAGGAGATGATGTTTTTCTGCTGGTCTCATCAGCCCCTCATCAGCCACTACTTATTTTAATTGTTGATTGAAATGAAACTCTCCACAACTACAAGTTTGCCATCTTGTACCTGATATGTATATTGAAATTTTTCTCATGCCTGCGCCTCATGCAAAAAAAAAAAAAATGCCGGACTTAAAATGTGTTGAATGTTTGAATGTGTTTTTAATATATGGTACCCTTTCTACTCTTGTATAGTAACTACATCTCTATTATAAATTGGAGGTTTGATGCTTGAATTTAAATCCCCTTTGCCTTCATTTATGTTCTAGAAAAAATTAAAACAAAGAAAACTGCAGTGTCTTATGAATTATGATTCAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00709	55518	58639	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000709s00024181.1	PF13881.1	Rad60-SLD_2	6	115	4.40E-40
Glyur000709s00024181.2	PF13881.1	Rad60-SLD_2	6	115	4.40E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.908
SRR1783600	control	14.797
SRR1783602	moderate drought stress	15.130
SRR1811619	moderate drought stress	14.694

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.736
DRR006520	Root Summer glycyrrhizin high producing strain	28.865
DRR006521	Root Winter glycyrrhizin high producing strain	17.853
DRR006522	Root Winter glycyrrhizin high producing strain	16.984
DRR006523	Root Summer glycyrrhizin low producing strain	55.656
DRR006524	Root Summer glycyrrhizin low producing strain	55.687
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.962
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.774
SRR2868004	Drought Stress (root)	74.293
SRR2967015	Control (root)	58.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.280
SRR9715740	Leaf	17.709
SRR9715741	Leaf	34.595
SRR9715739	Root	6.397
SRR9715742	Root	20.148
SRR9715743	Root	18.172

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.331
SRR8749028	MeJA induced 9h	20.737
SRR8749029	MeJA induced 9h	24.917
SRR8749030	Uninduced	25.192
SRR8749031	Uninduced	24.921
SRR8749032	Uninduced	24.080

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.088
SRR8400027	Control - Root	34.803