Gene detail information of Glyur000709s00024178 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61220.1 | 7.00E-18 | LYR family of Fe/S cluster biogenesis protein |
| NR | XP_003621395.1 | 2.30E-46 | LYR motif-containing protein 4B [Medicago truncatula] |
| trEMBL | tr|M5XBF2|M5XBF2_PRUPE | 2.00E-40 | Uncharacterized protein {ECO:0000313|EMBL:EMJ16395.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00709 | 41352 | 43601 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000709s00024178.1 | PF13232.1 | Complex1_LYR_1 | 12 | 71 | 2.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 132.300 |
| SRR1783600 | control | 134.228 |
| SRR1783602 | moderate drought stress | 226.700 |
| SRR1811619 | moderate drought stress | 231.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 119.095 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 117.083 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 190.741 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 185.336 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 115.281 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 113.955 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 102.952 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 104.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 72.894 |
| SRR2868004 | Drought Stress (root) | 65.626 |
| SRR2967015 | Control (root) | 97.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.949 |
| SRR9715740 | Leaf | 91.003 |
| SRR9715741 | Leaf | 71.786 |
| SRR9715739 | Root | 144.712 |
| SRR9715742 | Root | 110.268 |
| SRR9715743 | Root | 111.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 132.771 |
| SRR8749028 | MeJA induced 9h | 77.147 |
| SRR8749029 | MeJA induced 9h | 118.965 |
| SRR8749030 | Uninduced | 57.489 |
| SRR8749031 | Uninduced | 29.273 |
| SRR8749032 | Uninduced | 106.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 155.693 |
| SRR8400027 | Control - Root | 139.942 |