Gene detail

Gene detail information of Glyur000709s00024174

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15510.1	2.00E-77	TPX2 (targeting protein for Xklp2) protein family
NR	XP_004489500.1	0	PREDICTED: reticulocyte-binding protein 2 homolog a-like [Cicer arietinum]
Swissprot	tr\|F4I2H7\|TPX2_ARATH	7.00E-16	Protein TPX2
trEMBL	tr\|I1KWD0\|I1KWD0_SOYBN	2.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G26530.1}

Sequence

Transcript Sequence

>Glyur000709s00024174.1
CTCGTGCTCTCAATCCCTTCCTTCTCTCATTGCACTGACACTAACATCTCTCTTTCTCTCTCCGATTGAAGCACACCCCATTTTTTTTTTCTCTCTCCGACGGAGATGGCCTCCAAGAACGCCGAAGCAGCAACAGCAATGACTCCGACTCCACGCGTGTGTCGATCCAAGAATATTCAAGATACATCCAAATACGCCGAGAATTTCAACCCCAATGTTTCCTCTCAACAACCCCAACCACAACGAAGCCCAGTTTCCAAACCCTTATTATTCTCCAACCCTGACACTTCCTCTTCCTCCCCTGCTGCTGTGAGCAAGTCATGTTCTGCCAAAAAGTCTCAGAAACCAATTAAGAACCCCAACAACACCCCACTAGTTGTTAATAAGATCCGGCAGAGGAAGTTCGTCGTAGCGAAGAAGAAGCAGAAGGAAGGTGAAAGTGATGCCGCCGCCGATGCAGGCTCAACGGCGTCGTTTTGCAAGTGCAAGGACAAGAGCAGCAAGTGTCTGTGTGTGGCTTACCACAATCTGAGGAAGTCCCAGGAAGAGTTCTTCAATAATCGCCCTCATCATGATCACGAAGAAGAAGAAGCCACTGAAACTGAAAACCAGAGTACTGTGCTTGAACAAGGACAAGGAGAAGAACAAGGAGGTGGAAAATTGGGAAATAATGGTGTGAGTTTGTTGCTGAAACGTAGTAGGGAGAGTAGTGTTCCACAAAGTGTGTCTGGGTCTGGGAAAGTGATGAATTTGGTTAAGGCCTTCGAGAAGCTTCTCTCTGTAGCACCCGATAATGATCATGATCAAAAGGAGGAGGAGGAGAAGGAAACTCGAGAGAAGAATGACAAGGTGGTGATGAAATGGCCACCGCCAAAGTTGCAGCAGCAGCTTCATACTGCACCTGAAACTGGGCTCTCTGGCTNTTCTTCATTTTGCCCACCAAATTTCACTTTGACATCCCAAAACCTTGGCCTTGATCATCCACGTGCCTCGGTTTCTTCCTCTTGGGATAATAATAGCAGTGTGTCTAGCAGGACTTCTAACGGGGGTAGAAGGAGCAGGAGAAATAGCCTGGAATCGTCGAGCACTCTTGGGGGAAGGAGGTGGAGAAAGAAGCAGCAGAAAGTCACCAACCAAAAACCATTCAAGCTCAGAACTGAGCAAAGGGGGAAGTTAAAAGAGGAAGAATTTGTAAAGAAGGTACAAGAGATGATGACAGAAGAAGAGAAGCANAGGATACCTATTGCACAGGGTCTTCCTTGGACAACAGATGAACCTGAGTGCTTGGTAAAACCTCCAGTGAAAGAAACCACTATACCTATTGACCTGAAGCTTCACAGTGATGTGCGGGCAATGGATCGCGCTGAGTTTGACCAGCAGGTGGCAGAAAAATTGAGCTTCATAGAGCAATACAAATTGGAAAGGGAGAGACAACAGAAGTTGGCAGAAGAGGAAGAAGTTAGAAGGTTGAGGAAGGAACTCGTTCCAAAAGCACAACCCATGCCATATTTTGATAGACCTTTTTTGCCAAGAAGGTCAATGAAGAATCCAACCATACCTAGAGAACCCAAGTTTCATAAGAAGATCAAGTGCNGCTTATCATCATGGAATGATATGAACCCCTACTCCTCCGGCCTTCACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00709	26361	28859	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007067 mitotic nuclear division

cellular_component

GO:0005819 spindle

GO:0005874 microtubule

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000709s00024174.1	PF06886.6	TPX2	410	466	5.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.929
SRR1783600	control	3.773
SRR1783602	moderate drought stress	2.398
SRR1811619	moderate drought stress	2.314

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.583
DRR006520	Root Summer glycyrrhizin high producing strain	4.957
DRR006521	Root Winter glycyrrhizin high producing strain	0.067
DRR006522	Root Winter glycyrrhizin high producing strain	0.066
DRR006523	Root Summer glycyrrhizin low producing strain	2.156
DRR006524	Root Summer glycyrrhizin low producing strain	2.053
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.503
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.563

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.370
SRR2868004	Drought Stress (root)	4.301
SRR2967015	Control (root)	6.039

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.361
SRR9715740	Leaf	0.115
SRR9715741	Leaf	0.774
SRR9715739	Root	0.401
SRR9715742	Root	1.115
SRR9715743	Root	0.991

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.257
SRR8749028	MeJA induced 9h	6.910
SRR8749029	MeJA induced 9h	8.771
SRR8749030	Uninduced	0.156
SRR8749031	Uninduced	0.347
SRR8749032	Uninduced	0.828

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.334
SRR8400027	Control - Root	5.914