Gene detail

Gene detail information of Glyur000709s00024173

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15530.1	2.00E-35	biotin carboxyl carrier protein 2
NR	XP_004489502.1	3.44E-128	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like [Cicer arietinum]
COG	YP_007062988.1	2.00E-27	biotin carboxyl carrier protein [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q9LLC1\|BCCP2_ARATH	5.00E-55	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic (Precursor)
trEMBL	tr\|I3SZG2\|I3SZG2_LOTJA	3.00E-126	Uncharacterized protein {ECO:0000313\|EMBL:AFK45654.1}

Sequence

Transcript Sequence

>Glyur000709s00024173.1
ATTCTTATGAAGCAAACAAATGCACAATGCAGTGGCCGAAAATTTATTGTTCCAAGTTGGTTGAGAGTTCGAAACAGTGACGTTGTTGTTCTCATTGTTATCATCGAAGCCACAGTGTAAAAAAGCCAGTGTGTGTGTGTTCCTCCTTCGTAGTCTCCATCACCCATTGCCTCTCTTCTCAACAACCATCATTCCCCACACCCCTTCTTCGATNTAATCGCCTCCCAAAAACCCTTATATTCACACCGACCCACTTCACCATTCTGTTCAGATCACTGTGCCATTTGAGCTCAGAAGCAGGAAAAATCGGTTTTTGATTCGTGGGGTTGGTTCCAAATGGCGTCTTTCACCGTCCATTGCCCCAAATGCCTTTCCTTTGATCCTTTGGGACTCAACTCTCGGTCCCAACCACGGAACATGCAGATTTTGGGGTTGANGAAATCTCAGTCATTTGGATCTCTGAGTCGTGATTCAGCACCAGCCAGGATTCAGTGCCTTAAAAGGAAGCAATTATCTGTCTGGAAGTTTCAAGCACTACCTAATGAGGCTGCTACTGTGGCAAATTCTTCAAATTCTGCACCTGTACTGGTCAATGGACCTAAAGTTGCTTCACCAGAAGAGAAAGATACTCTTAACGGGAAACCCTNTGGTCCCAGCACTTCTGCGGATGAATCTTCAATTTCTGCATTTATGAATCAAGTTTCGAACCTTGTTAAACTTGTGGATTCTAGAGATATTGCGGAGCTGCAACTTAAGCAAGCAGGCTACGAGCTCTTGATAAGAAAAAAAGAAGCTTTGCAGCCTCCACCAGCTAGTGCTGTAGCACCNGTGCCGCAACCATTTTTCTACCCGACACATCCTTCTCAGCCAGCACCACCACCTGTTGCTACTTCTGCTCCTGCAAGCACTCCACCTTCAAAAGCTGCTCCTGCCCTGCCTCCGCCTGGAAAAACAAGTGCATCATCTCATCCACCGCTGAAATGTCCAATGGCAGGAACCTTTTACCGGAGTCCAGCACCCGGCGAACCACCATTTGTGGGTGANAAAGTGCAGAAAGGTCAGGTTGTGTGCATTATTGAGGCTATGAAANTGATGAATGAAATTGAAGCTGATCAATCAGGAACAATTACTGATATACTGGTAGAAGATGGGAAATCAGTCAGTGTAGACATGCCTCTTTTTGTAATTGTACCATGAGTACCACAAGGGACCTTACCTACATTGTAGTTGTTGGAGACCTCCGTTGTTGGATAAAATGGCACAAAGATTGTAGTGACNATGGCACGATATTTTCATTACTCAGAAATTTCTTTTGCAATAATGTTTGTTCCATTTTAGGAAATCTTTATATTTATTTAAAAGAGACATAAAAGCCTCGGCAATGCATATCATCAGGAGTGTTGGAAATTTTTATTTTTTTATTTTTGCTTACATGGAATGTTGGAATTTTTAGTTCTAATTAGTTTTTAACATTGTAGTCTCAAAGTTTTATACATTTAAGGGTCCTCATTTCATTCTCCTATATATGAACCTGCTGGCTGGTTTTACAAGAACTCGTTACAGCTAGCATGTTTATGTGGGGTAAAAGATAGATTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00709	21218	24982	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006633 fatty acid biosynthetic process

cellular_component
GO:0009317 acetyl-CoA carboxylase complex

molecular_function
GO:0003989 acetyl-CoA carboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000709s00024173.1	PF00364.17	Biotin_lipoyl	214	284	1.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.861
SRR1783600	control	14.958
SRR1783602	moderate drought stress	7.997
SRR1811619	moderate drought stress	7.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.777
DRR006520	Root Summer glycyrrhizin high producing strain	8.013
DRR006521	Root Winter glycyrrhizin high producing strain	4.824
DRR006522	Root Winter glycyrrhizin high producing strain	4.860
DRR006523	Root Summer glycyrrhizin low producing strain	5.773
DRR006524	Root Summer glycyrrhizin low producing strain	5.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.247
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.110

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.670
SRR2868004	Drought Stress (root)	19.454
SRR2967015	Control (root)	19.396

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.947
SRR9715740	Leaf	18.855
SRR9715741	Leaf	22.910
SRR9715739	Root	9.923
SRR9715742	Root	9.565
SRR9715743	Root	9.776

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.556
SRR8749028	MeJA induced 9h	5.982
SRR8749029	MeJA induced 9h	7.830
SRR8749030	Uninduced	2.888
SRR8749031	Uninduced	0.764
SRR8749032	Uninduced	0.773

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.863
SRR8400027	Control - Root	33.067