Gene detail information of Glyur000709s00024171.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39250.1 | 1.00E-99 | F-box family protein |
| NR | XP_004489503.1 | 8.70E-174 | PREDICTED: F-box protein At5g39250-like [Cicer arietinum] |
| Swissprot | tr|Q9FL82|FB270_ARATH | 6.00E-125 | F-box protein At5g39250 |
| trEMBL | tr|C6TIC7|C6TIC7_SOYBN | 2.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G50040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00709 | 8330 | 9085 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000709s00024171.1 | PF12937.2 | F-box-like | 4 | 43 | 4.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.798 |
| SRR1783600 | control | 18.658 |
| SRR1783602 | moderate drought stress | 16.279 |
| SRR1811619 | moderate drought stress | 16.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.303 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.108 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.620 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.230 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.206 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.556 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.867 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.896 |
| SRR2868004 | Drought Stress (root) | 49.307 |
| SRR2967015 | Control (root) | 46.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.241 |
| SRR9715740 | Leaf | 25.790 |
| SRR9715741 | Leaf | 28.886 |
| SRR9715739 | Root | 31.390 |
| SRR9715742 | Root | 14.980 |
| SRR9715743 | Root | 18.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.575 |
| SRR8749028 | MeJA induced 9h | 32.194 |
| SRR8749029 | MeJA induced 9h | 27.280 |
| SRR8749030 | Uninduced | 17.672 |
| SRR8749031 | Uninduced | 23.306 |
| SRR8749032 | Uninduced | 35.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.353 |
| SRR8400027 | Control - Root | 28.770 |