Gene detail

Gene detail information of Glyur000708s00035900

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G11560.4	LETM1-like protein
NR	XP_004513581.1	PREDICTED: uncharacterized protein LOC101510994 isoform X3 [Cicer arietinum]
trEMBL	tr\|K7LHY4\|K7LHY4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G08801.1}

Sequence

Transcript Sequence

>Glyur000708s00035900.1
CAATTTACAACGCCCGCATCACCGTCGTCACGAAGACACCCCTCGTGTGTGATTTGAGGGTTCTCCACGTAAACAGATAAAGCACCCCTCGTGCCACGTCATCGTTTCTTTCCATCTTTCNTTCCGTGTCTGTTTGGACTTTGGACCACGCAAGTTCTTCTTCTACTCTTTCACTGTTTTCTTCCCTCCTTTTCTCTCACGTAACCGAAGCTCATTTTTTCTCTCCGATTCTGCTTCTTCCACTACATGGCAGTTAAATTCCACAGCAGCAGCAACTCTCTACCGTTAAGCTCTTCGAATTGTTGGCTCTCGAATGGATCCCCTTGTGTAGGGAGAAAAGTGTTGGACTTGCATTGCGTACTATTGAGTAAATGGGGTAGTTCAAGAAAGGGATGCCTCATACAGCATGATTTGTTATCGAGCAGTGGTCATGGTTTGGTGGGCCGCAGAAAATATTATTTGACGTTTTCTAAGCCTGGAAAGAGTGTATACCTGCTCCCATTTGCTTCCTCTGATGATAGCGTGACTGTCAATGGGAACCCCCAAGCTGGTGCCAGTACAAACCTTGAAAAAATGAGGGTGAAACTGAATAGGTCAATGGAAGATGAAGACTTCTATGATGAACTTGTTCAAGCTTTATATGACGCAGCCAGGGTTTTTGAGCTAGCAGTTAAAGAGCATAAATCGTACTCACGTATATCCTGGTTTTCGACAGCCTGGCTTGGGGTAGACCAAAATGCATGGGTGAAGGCACTTTCATGTCAGGCTGCTGTGTACTCTTTATTGCAAGCTGCAAGTGAAATCTCAGCCCAAAATGATGGCAGAAACAGAAATGTCAATGTATTTGTTCAAAGGAGTTTGCTGAGGCTATCTGCTCCCCTGGAGAGCTTAATTAGAGAAAATTTATCGGCTAAACAGCCTGAAGCATATGAATGGTTTTGGTCTGAGCAAGTTCCAGCCGTAGTGACATCTCTTGTTAATAAGTTTGAAGGGGATGGACGCTTTACTGCTGCCATTGCATTGCCTGAAAAAAGTAAGGGTTTAAGCAGTGCAAGTGACATATCACTTCTCCTGCTTGCACTTACATGCATTGCTGCAATTGCTAAACTTGGCCCGGCAAAAGTTTCTTGTTCACAATTCTTTTCCATGAGCACAGAGATAACTGGTAGTTTGATGGACATGCTGGTTGGTTTAATTCCTGTAAGTCAAGCTTATAGTTCTCTAAAGGATGTTGGTCTACACAGAGAATTTCTTGTACATTTTGGTCCTCGAGCTGCAGCATGTAGAGCAAAAGATGAGTGGGGTTCAGAAGAGGTCGTTTTCTGGGTAAATCTTGCTCAGAGGCAGCTGCAGCAAGCTATTGATAAGGAGAAAATATGGTCAAGGCTGACAACATCTGAAAGTATTGAGGTTTTGGAGAAGGATTTGGCTGTATTTGGATTCTTTATTGCTTTAGGAAGAAGTACGCGGTATCTTATTGGGGGCAGTGTTTTATACTACCCTCANCTCTCATCCATTAGTTCATATCAATTGTATGTTGAGGTAGTTTGTGAAGAGTTGGATTGGCTTCCTTTTTATCCGGGAATCACCAGCATCACAAAACAGTCGCACGGGCATAGAAATAAACCAGAAGGTCCTCCAAATGCTGAAGCAGTGACCCAAGCATTTGATGTTTGCTCTCATTGGATGCAGAGCTTTATTAAATACAGCACATGGCTGGAGAGCCCCTCAAACGTAAAAGCAGCTGAGTTTCTCTCAACAGGGCACAATAAGTTGATGGAGTGCATGGAAGAACTTGGGATGATAAAGGATAAGACATTGGAGAGTGATAGCAAGAAAACAGTTGACAGACATAGATCCACAGTTCAGTCAATGATAAAAGAGTCGGATTCTTTTGATGAGGCATTGAAAAGTGTTGAAGAAGCTGTGATAAAACTTGAAAAGTTACTTCAAGAATTGCATGTGTCAAGCTCTAGTACTGGAAAAGAGCATTTGAAAGCTGCCTGTTCTGACTTGGAAAAAATACGAAAACTTAAGAAAGAAGCTGAATTCCTGGAGGCATCTTTCAGAGCAAAAGCTGATTCTCTACAAGAGGGAGTCAATAGTGGTCAGACCATCAAACCAGTTGGNAAGGAGGATGGGTATATAAAAGGGAAAAGCAGAAAGAATGATAATGTAAGGGTGGACAGGAGCAAAAGATATGTTGGAAAATCTCGTGGATTGTGGAGCATCTTTGTACGTCCTGTCACCAGAAAGTCTGACCTGGAATCTGAGGTGGATGCTTGTGAAAATTATATTGAACAGCCTGCACCAAATGTAGGGGTTGTGGACCAAGAATCCAATGAAATCCACCGCTTTGAGCTTTTGAGAAATGAGCTGATAGAACTTGAGAAAAGGGTTCAAACAAGTGCCTATCAATCAGAAAATAATGAGAATTTGATGATCAGTGATGATGGTGCCCGTTATAGTGATGAAGCTGGAGGTGTTCAGATGGCCAGGGTTCAAAAGAAAGAAAATATCCTAGAGAAATCTTTTGGCAAACTAAAAGAAACAGGAACGGATGTCTTGCAAGGAACTCAACTTCTTGCTATTGATGTTGCTGCTGCCATGGGTTTGCTTAGAAGGGCCATAATAGGGGATGAATTGACTGAGAAGGAGAAGAAAACACTTAAAAGAACCTTGACTGACATGGCTTCGGTTGTTCCTATTGGAGTTTTAATGCTTCTCCCAGTTACTGCCGTTGGGCATGCAGCCATGTTGGCTGCTATTCAGAGATATGCCCCAGCTCTGATCCCATCCACATATGCACCAGAAAGGTTGGATCTATTGAGGCAGCTCGAGAAAGTAAAGCAAATGACAGCCAGTGATATGGACTCAGATGAAGAAGTGGATGAAGCTAAATGATCAGGTGCAGTGCAGATATATGTACAGCTAGCAGAACTTGACATTCTTCCTGGTCTGGTGAAAACTGGATTGGCTTTGTTCTCCGCTTTCTGGAAATTTTTTGTTGATGCCAAATTTATTAGAGAGGAGTTGGGCATAGAGAAGTTCGTTCCACGTGTCCGGCACTCCGGGTAAACACCAGTGGCTACAGTCCTGAGGAGCGTNAGGCGGAGTGCCTGGTTCCCGATACTTGGAAGGGTGACCATCTTTCCTCAATTCTGAAAGATACGTGATATTCAGAAACTGGACTTTCCAGCTTCCATATTGCATCTGTTTGACAACATCAGACATAAGAATGTTATAATATGGTTCAGTTTCAAGTTTTGTAGGGTCCTTTTCTGGTTCNGTAACCATGTCACACTCCCCTCCATCATTCCATGTGCCATTCCTGCAATTTCACTGTAAAGACTCTTTACCCAAATGTACTCCGAAAGGATGACTAAATTTGATCANGAGTTTTGAAGTGAGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00708	94983	115922	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000708s00035900.1	PF07766.8	LETM1	763	872	8.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.328
SRR1783600	control	6.421
SRR1783602	moderate drought stress	7.217
SRR1811619	moderate drought stress	7.187

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.887
DRR006520	Root Summer glycyrrhizin high producing strain	6.883
DRR006521	Root Winter glycyrrhizin high producing strain	11.837
DRR006522	Root Winter glycyrrhizin high producing strain	11.562
DRR006523	Root Summer glycyrrhizin low producing strain	8.378
DRR006524	Root Summer glycyrrhizin low producing strain	8.356
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.145
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.311

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.201
SRR2868004	Drought Stress (root)	21.558
SRR2967015	Control (root)	20.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.641
SRR9715740	Leaf	41.244
SRR9715741	Leaf	32.916
SRR9715739	Root	1.702
SRR9715742	Root	9.112
SRR9715743	Root	7.588

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.728
SRR8749028	MeJA induced 9h	22.611
SRR8749029	MeJA induced 9h	17.950
SRR8749030	Uninduced	16.908
SRR8749031	Uninduced	22.865
SRR8749032	Uninduced	23.633

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.543
SRR8400027	Control - Root	15.164