Gene detail

Gene detail information of Glyur000708s00035899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11570.1	2.00E-133	TRICHOME BIREFRINGENCE-LIKE 8
NR	KEH41970.1	0	Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein [Medicago truncatula]
Swissprot	tr\|Q9CAX1\|TBL8_ARATH	7.00E-173	Protein trichome birefringence-like 8
trEMBL	tr\|A0A072VV51\|A0A072VV51_MEDTR	0	Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein {ECO:0000313\|EMBL:KEH41970.1}

Sequence

Transcript Sequence

>Glyur000708s00035899.1
ATGAACAGAGAATCAGCATATGCACTCTCCCTTCTTGTCCTCTTACTCTCTTCCCTATTCTATTTCAACCTCGTGAGTACCCCTTTCGATCGACGCTTTCTTTCTCGCTTTGATTTTTGGTCACACATCACTCCCAATTATGATGATTTACAAATACAACCGCCACCAACAACCGAAGCCTGTGATTATTCCAAAGGTCAATGGGTATGGGACGAAGCTCACTCATGTGATCAATTGTTATACGACGAACAATGCCCCTTTCTTGATCCCGGATTCCGGTGCCTCCGAAACGGACGGAGAGATGAAGGTTATCGTAAATGGAGATGGCAACCTCACGATTGCGACCTTCCCCGGTTCAATGCCAGTGACCTCCTAGAGAGGAATCGCAATGGGCGCATTGTGTTTGCAGGTGATTCTGTGGGAAGAAACCAATGGGAGTCATTACTGTGCATGCTGACAAAAGGGGTCTCAAACCTGTCAAGAATATATGAAGTGAATGGAAATCCCATAAGCAAACACAAGGGATACCTAGTGATGAGATTCCAGGAATACAACATGACAGTAGAGTACTACAGGGTACCCTTCTTGTCTATTATAGGTCGCCCACCACTCAACTCTTCCAATCAAGTTAAAATGGCTATCAGGCTTGACGAGTTGCACTGGTATTCCAATAAATGGGTGGATGCAGATGTTCTGGTTTTCAATTCCGGCCACTGGTGGAACCCAGACAAAACAATCAAGTCGGGCAGCTACTTCCAGGAAGGAGGGAAGGTAAATATGACTATGACTGTGAAGGAAGCATTTAGGAGATCCTTACAGACATGGAAATCATGGGTATTGGGTAATCTAAATCCTACGAGGAGTTTCGTCTTCTTTCGTAGCTATTCCTCCGTTCATTACAGGCAATCATCCTTTCGGAGTACATTTGGGAATGGCACATGGAATGATGGAGGGGAGTGTGACATGGTTACNGAACCAGAAAAGGACCCTACAAAACTTGAAACTGAACCATATTATAACATTCTTATGTCTGATGTTGTCAAACAGATGCAATATGGAAGCTGGAAAGTCCAGTTTCTGAATATCACGTATCTTTCAGAATTGAGGAAAGATGGTCACCCTTCCAAGTATCGGGAACCAGGCACTCCGCCTNACGCTCCTCAGGACTGTAGCCACTGGTGTTTACCCGGAGTGCCGGACACGTGGAACGAACTTCTCTATGCCCAACTCCTCTCTAATAAATTTGGCATCAACAAAAAATTTCCAGAAAGCGGAGAACAAAGCCAATCCAGTTTTCACCAGACCAGGAAGAATGTCAAGTTCTGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00708	91748	95467	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000708s00035899.1	PF14416.1	PMR5N	59	115	7.80E-19
Glyur000708s00035899.1	PF13839.1	PC-Esterase	116	411	1.60E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.668
SRR1783600	control	2.403
SRR1783602	moderate drought stress	2.134
SRR1811619	moderate drought stress	2.688

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.138
DRR006520	Root Summer glycyrrhizin high producing strain	1.804
DRR006521	Root Winter glycyrrhizin high producing strain	3.676
DRR006522	Root Winter glycyrrhizin high producing strain	4.144
DRR006523	Root Summer glycyrrhizin low producing strain	2.220
DRR006524	Root Summer glycyrrhizin low producing strain	2.127
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.618
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.705
SRR2868004	Drought Stress (root)	0.733
SRR2967015	Control (root)	0.497

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.431
SRR9715743	Root	0.122

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.033
SRR8749028	MeJA induced 9h	0.022
SRR8749029	MeJA induced 9h	0.291
SRR8749030	Uninduced	0.041
SRR8749031	Uninduced	0.139
SRR8749032	Uninduced	7.198

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.450
SRR8400027	Control - Root	1.421