Gene detail

Gene detail information of Glyur000708s00035897.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06250.2	1.00E-51	AP2/B3-like transcriptional factor family protein
NR	XP_003537081.1	3.10E-126	PREDICTED: B3 domain-containing protein At2g36080-like [Glycine max]
Swissprot	tr\|Q9FNI3\|Y5625_ARATH	2.00E-64	B3 domain-containing protein At5g06250
trEMBL	tr\|K7LHY6\|K7LHY6_SOYBN	1.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G08871.1}

Sequence

Transcript Sequence

>Glyur000708s00035897.1
CCCCCTTTCCTTCTCTCTCTCTTTGTCATATCTTTGCAAGAGACCTCCATCAGATATATAGTTCCCAAAGTTTCCACATCAAACCATAATCATCACGCCTCTTCCCACATCAAATATTCATTCTCTCCATATTCCCCACCACATTCCCCTCCATCAAGTAGAAAAAAATGTCCACAAACCACTACTCCATGAACCTTCCAGAAACGACACCGTGGTGGTCTCAACAACAACCCACATGGTTCAATTCTCACACTCCATCTATAGAAAACCCACCTCCACCTCCACCCCATTTCAACCTCAACCACATTCAAAACGACAACATCGACGAAGAAGAAGAAAACCACGATGTTGTCGATGACAACGACAACAGCGCCGCCACGACACAAGGAATAGAAGAGAAAGAAACGATGTTTGAGAAACCGTTAACGCCGAGCGACGTTGGGAAACTAAACCGTCTCGTAATCCCAAAGCAGCAGGCGGAGAAGTATTTCCCGCTGGGCGCTTCTGGAGGTGACTCGGGNGAGTGCAAGGGGTTGTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGAGGTTCCGTTACTCGTACTGGAACAGTAGCCAGAGCTACGTGTTGACTAAGGGATGGAGCCGTTACGTGAAAGACAAGCGCCTCGATGCTGGCGACGTCGTTTTGTTCGAGCGACACCGTGCTGATTATCAGCGACTCTTCATTGGGTGGAGGCGTAGGAGTACTACTGCCACCGACCCGGCTCACGTTAGCAGGGGCAACGGTAAGAATGAGGCTGGTGGTGGGGGTNTGGGCGTCGGGTGGACCAGAGGGCTCTATTCTGCGCACCCTTATCCTGCGCATCAGCTCTCGCCATACCAACATGACTGTCTTCATGCAGGTAGTAGAGGGTCCCAAGGTCATCAGAACCAAAGGACAAGACCGGTGGGAAACAACAGTTCTAGTTCAAGTTCAAGTTCAAGTTCGAGTTCAAAGGTACTTAGGCTTTTCGGGGTCAACATGGAGTGCCAACCTGATCAACATGATGATGATTCTGGACCTTCCACAACCCAATGCTTATGCTCCCACAATAGTGACAACAACATGCCATCAACACAGGGTACAGATACCCACAATTTCTACCAGTATCATCAACCTTCTTCTAATCCTAATTCCAACCCTCACCCTCATCACATGGTACGTCACCAACCATACTACTACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00708	14635	17008	+

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000708s00035897.1	PF02362.16	B3	82	189	3.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.448
SRR1783600	control	0.363
SRR1783602	moderate drought stress	1.501
SRR1811619	moderate drought stress	1.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.330
DRR006520	Root Summer glycyrrhizin high producing strain	1.329
DRR006521	Root Winter glycyrrhizin high producing strain	2.198
DRR006522	Root Winter glycyrrhizin high producing strain	2.130
DRR006523	Root Summer glycyrrhizin low producing strain	0.454
DRR006524	Root Summer glycyrrhizin low producing strain	0.534
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.087
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.568
SRR2868004	Drought Stress (root)	1.373
SRR2967015	Control (root)	2.165

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.774
SRR9715740	Leaf	16.039
SRR9715741	Leaf	16.161
SRR9715739	Root	0.687
SRR9715742	Root	0.729
SRR9715743	Root	1.557

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.076
SRR8749029	MeJA induced 9h	0.097
SRR8749030	Uninduced	0.129
SRR8749031	Uninduced	0.031
SRR8749032	Uninduced	0.346

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.847
SRR8400027	Control - Root	1.836