Gene detail

Gene detail information of Glyur000706s00025022

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46620.1	1.00E-133	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004502706.1	0	PREDICTED: mitochondrial chaperone BCS1-like [Cicer arietinum]
COG	YP_007098995.1	3.00E-19	AAA+ family ATPase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|P46466\|PRS4_ORYSJ	3.00E-06	26S protease regulatory subunit 4 homolog
trEMBL	tr\|G7J864\|G7J864_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:AES72562.2}

Sequence

Transcript Sequence

>Glyur000706s00025022.1
ATGGTCATGATTTGGCCTTGGTTTTCCATCTCCTCCATTTCCTTCCTCCTCTTTTCCTCTTTCCTAATCCTTCGTTTCTTCCGCAAAACCTCTGCACTCCACATCCTCAAACACTGGTGGCTTTCCTTCGAAAACCGCCTCCACCTTCACCAATCCTTCAAAGTCCCTCTCTACGACCACCACAACCTCCGTGAGAATCAACTCTACCGGAAAATCCTCACCTACCTCGATTCCCTCCCTTCCGTTCAGGACTCCGATTTCACCAACCTCTTCTCCGGTCCCAATCCCTCCGACATCTTCCTCCACCTCGACGCCAACCACACCGTCCACGACACCTTCCTCGGCGCCAACCTCTNCTGGACCAACCACACCGCCGCCGGCGACTCCTCCTCCTCCGCCGCGCTCGTCCTCAAAATCAAGAAGAAGGACAAGCGAAGAGTCTTCCGACAGTACTTCCAGCACATTCTAACTGTCGCCGACGAGATCGAGCAGCGGAAGAAGAANGAAATACGACTTTTCCTTAACTCCGGCAGCTCCGGCAACTCCGGCGGTGAAGTCTCGCGGTGGCGATCGGTGCAGTTCAATCATCCGGCGAGCTTCGAGACGGTTGCGATGGATTTGGAGCTTAAGAACAAGGTGAAATCAGATCTGGACCAGTTCCTCAAGTCGAAACAGTACTACCACCGGTTAGGTCGCGTTTGGAAGCGTAGCTACCTTCTCTACGGTTCGTCCGGTACGGGAAAATCAAGCTTCGTNGCTGCGATGGCNAAGTTCCTCTGCTACGACGTGTACGACATCGACGTTTCGAAACTAACCGACGGTTCCGATTGGAAGGTGCTTCTGATGCAAACGACNCCGAAGTCGATGATCGTNATCGAGGATCTCGACCGTTTAATCGCCGGTTCGAAATCGACGGCTGTGAGCATATCCAGCGTGTTGAACTTCATGGACGGGATCGTTTCTTGTTGCGGTGAAGAACGCGTGATGGTGTTCACGATGAACGGTACAAAAGATGAGGTTGATCAAGCGGTGTTGAGNCCTGGGAGAGTTGATGTTCACATACACTTCCCCTTATGTGATTTCTCCACCTTCAAGATTCTCGCGGGTAGTTATTTGGGGATTAAGGAGCANAAGCTGTTTTCTCAGGTGGAAGAGGTTTTTCAGACCGGGGCCCGGCTCAGCCCGGCTGAGGTAGGCGAGATTATGATATCGAACCGGAACTCACCGAGCCGGGCCTTGAAAACCGTTATTACGGCCTTGCAGCAGGTGCAGCAGGCCAATAGGTTGAGTCATAGCGGGTCGGGTCTGAGCTCCGACGAGAACAATGATTTGGGTGTGCCTGTGATGTGTAGCGAGAGTGTTCACACGGTGAGGGAGTTCAGGAAGTTGTATGGGCTTCTGCGTTTGGGAAGTAGGAGGAAGGAGGACTCAGTACATTCTTCGGGTCCATTGGAGAAGGAAGCTCCGCCGCGTGTCGAGGGTCGGGTCGGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00706	108692	110185	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000706s00025022.1	PF14363.1	AAA_assoc	38	124	1.10E-08
Glyur000706s00025022.1	PF00004.24	AAA	239	358	4.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.042
SRR1783600	control	4.112
SRR1783602	moderate drought stress	6.604
SRR1811619	moderate drought stress	6.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.045
DRR006520	Root Summer glycyrrhizin high producing strain	6.689
DRR006521	Root Winter glycyrrhizin high producing strain	2.622
DRR006522	Root Winter glycyrrhizin high producing strain	2.449
DRR006523	Root Summer glycyrrhizin low producing strain	11.751
DRR006524	Root Summer glycyrrhizin low producing strain	11.373
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.879

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.542
SRR2868004	Drought Stress (root)	35.321
SRR2967015	Control (root)	34.608

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.994
SRR9715740	Leaf	3.069
SRR9715741	Leaf	11.732
SRR9715739	Root	5.265
SRR9715742	Root	7.692
SRR9715743	Root	5.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.941
SRR8749028	MeJA induced 9h	15.886
SRR8749029	MeJA induced 9h	7.128
SRR8749030	Uninduced	41.869
SRR8749031	Uninduced	54.349
SRR8749032	Uninduced	43.970

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.168
SRR8400027	Control - Root	11.172