Gene detail information of Glyur000706s00025013 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53550.2 | 0 | YELLOW STRIPE like 3 |
| NR | XP_006581667.1 | 0 | PREDICTED: metal-nicotianamine transporter YSL3-like isoform X2 [Glycine max] |
| COG | YP_004271220.1 | 5.00E-35 | oligopeptide transporter [Planctomyces brasiliensis DSM 5305] |
| Swissprot | tr|Q2EF88|YSL3_ARATH | 0 | Metal-nicotianamine transporter YSL3 |
| trEMBL | tr|I1KAX7|I1KAX7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G13820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00706 | 71559 | 75642 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000706s00025013.1 | PF03169.10 | OPT | 66 | 668 | 1.70E-119 |
| Glyur000706s00025013.2 | PF03169.10 | OPT | 42 | 644 | 1.50E-119 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.940 |
| SRR1783600 | control | 20.705 |
| SRR1783602 | moderate drought stress | 17.507 |
| SRR1811619 | moderate drought stress | 17.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.874 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.327 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.799 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.895 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.540 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.592 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.616 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.601 |
| SRR2868004 | Drought Stress (root) | 35.372 |
| SRR2967015 | Control (root) | 29.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.534 |
| SRR9715740 | Leaf | 48.016 |
| SRR9715741 | Leaf | 27.242 |
| SRR9715739 | Root | 5.072 |
| SRR9715742 | Root | 13.312 |
| SRR9715743 | Root | 12.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.582 |
| SRR8749028 | MeJA induced 9h | 28.867 |
| SRR8749029 | MeJA induced 9h | 19.735 |
| SRR8749030 | Uninduced | 40.095 |
| SRR8749031 | Uninduced | 26.031 |
| SRR8749032 | Uninduced | 10.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.434 |
| SRR8400027 | Control - Root | 78.659 |