Gene detail information of Glyur000706s00025012


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53560.13.00E-62cytochrome B5 isoform E
NRAFK39502.11.79E-89unknown [Medicago truncatula]
COGYP_008870122.17.00E-13soluble cytochrome b558 [candidate division WWE3 bacterium RAAC2_WWE3_1]
Swissprottr|Q42342|CYB5E_ARATH5.00E-79Cytochrome b5 isoform E {ECO:0000303|PubMed:19054355}
trEMBLtr|I3SGW0|I3SGW0_MEDTR7.00E-90Uncharacterized protein {ECO:0000313|EMBL:AFK39502.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold007065296856691-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0020037  heme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000706s00025012.1PF00173.23Cyt-b59818.10E-29
Glyur000706s00025012.2PF00173.23Cyt-b59818.10E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control197.935
SRR1783600control199.334
SRR1783602moderate drought stress166.519
SRR1811619moderate drought stress165.088

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain201.261
DRR006520Root Summer glycyrrhizin high producing strain200.415
DRR006521Root Winter glycyrrhizin high producing strain287.819
DRR006522Root Winter glycyrrhizin high producing strain280.490
DRR006523Root Summer glycyrrhizin low producing strain240.246
DRR006524Root Summer glycyrrhizin low producing strain241.939
DRR006525Leaf Summer glycyrrhizin high producing strain155.820
DRR006526Leaf Summer glycyrrhizin high producing strain155.950

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)337.242
SRR2868004Drought Stress (root)313.315
SRR2967015Control (root)297.961

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf219.228
SRR9715740Leaf173.811
SRR9715741Leaf237.056
SRR9715739Root152.779
SRR9715742Root145.531
SRR9715743Root147.019

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h540.356
SRR8749028MeJA induced 9h534.840
SRR8749029MeJA induced 9h473.345
SRR8749030Uninduced1246.968
SRR8749031Uninduced799.369
SRR8749032Uninduced952.892

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root263.525
SRR8400027Control - Root217.364

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved