Gene detail information of Glyur000706s00025006


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G52590.12.00E-51ubiquitin extension protein 1
NRXP_006430159.11.77E-65hypothetical protein CICLE_v10013083mg [Citrus clementina]
COGYP_004089966.13.00E-38ubiquitin [Ruminococcus albus 7]
Swissprottr|P49636|RL40_NICSY7.00E-6660S ribosomal protein L40 (Precursor)
trEMBLtr|I1NAQ2|I1NAQ2_SOYBN6.00E-66Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G38170.2}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold007062138422819-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000706s00025006.1PF00240.18ubiquitin6741.10E-34
Glyur000706s00025006.1PF01020.12Ribosomal_L40e78982.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control329.865
SRR1783600control331.154
SRR1783602moderate drought stress292.711
SRR1811619moderate drought stress290.215

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain455.007
DRR006520Root Summer glycyrrhizin high producing strain445.730
DRR006521Root Winter glycyrrhizin high producing strain235.463
DRR006522Root Winter glycyrrhizin high producing strain229.526
DRR006523Root Summer glycyrrhizin low producing strain387.879
DRR006524Root Summer glycyrrhizin low producing strain388.731
DRR006525Leaf Summer glycyrrhizin high producing strain227.076
DRR006526Leaf Summer glycyrrhizin high producing strain220.373

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)658.674
SRR2868004Drought Stress (root)442.685
SRR2967015Control (root)396.329

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf236.980
SRR9715740Leaf210.084
SRR9715741Leaf227.700
SRR9715739Root91.156
SRR9715742Root205.637
SRR9715743Root179.801

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h360.103
SRR8749028MeJA induced 9h184.764
SRR8749029MeJA induced 9h293.300
SRR8749030Uninduced75.389
SRR8749031Uninduced97.601
SRR8749032Uninduced85.574

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root537.770
SRR8400027Control - Root498.566

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved