Gene detail information of Glyur000706s00025005 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52590.1 | 4.00E-12 | ubiquitin extension protein 1 |
| NR | XP_008452129.1 | 1.59E-13 | PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis melo] |
| Swissprot | tr|Q9M1P9|R27AA_ARATH | 1.00E-15 | 40S ribosomal protein S27a-1 (Precursor) |
| trEMBL | tr|V7AS46|V7AS46_PHAVU | 9.00E-14 | Uncharacterized protein {ECO:0000313|EMBL:ESW08482.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00706 | 20032 | 21204 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000706s00025005.1 | PF01020.12 | Ribosomal_L40e | 8 | 37 | 6.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.771 |
| SRR1783600 | control | 38.352 |
| SRR1783602 | moderate drought stress | 21.928 |
| SRR1811619 | moderate drought stress | 23.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 133.331 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 137.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 82.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 76.687 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 71.754 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 75.347 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.997 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 432.793 |
| SRR2868004 | Drought Stress (root) | 283.524 |
| SRR2967015 | Control (root) | 238.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 167.342 |
| SRR9715740 | Leaf | 162.545 |
| SRR9715741 | Leaf | 163.072 |
| SRR9715739 | Root | 64.631 |
| SRR9715742 | Root | 109.965 |
| SRR9715743 | Root | 105.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 254.821 |
| SRR8749028 | MeJA induced 9h | 104.141 |
| SRR8749029 | MeJA induced 9h | 249.132 |
| SRR8749030 | Uninduced | 70.946 |
| SRR8749031 | Uninduced | 87.102 |
| SRR8749032 | Uninduced | 83.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 275.816 |
| SRR8400027 | Control - Root | 252.375 |