Gene detail

Gene detail information of Glyur000706s00025003

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53580.1	3.00E-128	NAD(P)-linked oxidoreductase superfamily protein
NR	AES72571.2	0	aldo/keto reductase family oxidoreductase [Medicago truncatula]
COG	YP_007093627.1	6.00E-113	aldo/keto reductase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q56Y42\|PLR1_ARATH	7.00E-170	Pyridoxal reductase, chloroplastic (Precursor)
trEMBL	tr\|G7J873\|G7J873_MEDTR	0	Aldo/keto reductase family oxidoreductase {ECO:0000313\|EMBL:AES72571.2}

Sequence

Transcript Sequence

>Glyur000706s00025003.1
AAACAATTTTCCTTTTTTTTCTTTTAATTCTTGTTGTGTTTCCAAACACGACCCAACTGATCCATAACGAGGCGAGGATTCAATGGTTACCACACACCCTCACACCACTGCAAACGAATTAACTACCAAACTCAATTTGGGCNAAGTTGTGTTGTTACTTATCAATGGCACTTTCAGCTTGCAGTGTTGGTTCTCCAAGACCATCTTTTCCACTCAAATTCCCTCCCTTCTGGCCATCACAAAAGCTTCTTTGGGGGTACAGGGAATCCATGGATGATGAGCTTCAACAAGTCTTCAACATGGCTGTGGAGAATGGTATCAATCTCTTTGACACTGCTGATTCTTATGGCACCGGAAGGTTGAATGAGAAAAAGGGAAGCCGACGTGAAATAGTAATTGCTACAAAGTTTGCTGCATATCCATGGCGCCTCACACCAGGGCAGTTTGTGAATGCTTGCAGGGCATCACTGGATAGGATGCAGATTGAGCAAATTGGGATAGGACAATTACATTGGTCAACTGCAAATTATGCTCCTTTACAGGAATTGGCTCTTTGGGATGGCTTAGGTTTAGTTCAAGCTGTTGGAGTAAGCAACTATGGACCAAAGCAGCTTTTGAAGATACATGATTACCTGAAAGACCGTGGAGTCCCCTTATGCTCAGCCCAGGTGCAATTCTCTTTGCTAAGCATGGGGGAAGATCAGCTAGAGATAAAGAATATATGTGATTCTCTTGGTATTCGCATGATTGCTTATAGTCCTCTAGGACTCGGAATGCTTACTGGGAAATACTCACCATCCAAACTTCCAACTGGGCCAAGGGGGTTGTTATTTAAGCAAATACTTCCAGGATTGGATCCTTTATTGAGTTCCCTGNGAGACATTGCAAATAAAAGGCGCAAAACCATGTCACAAGTTGCAATAAATTGGTGCATATGCAAAGGAACAGTTCCAATTCCTGGGGTCAAGTCAATAACACAAGCAGAGGAAAATCTGGGTGCTCTGGGTTGGCGCCTCTCCAAAGACGAGTTGCTTCAGTTGGAGTATGCAGCACAAGAATCACCTCGTAGGATGATCCAGAACATTTTCCAGACCAGTGGCGAGGTTTCAGCACAAGGTGCAGACCGAGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00706	13505	19437	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05275	E1.1.1.65	EC:1.1.1.65	Vitamin B6 metabolism	map00750

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000706s00025003.1	PF00248.16	Aldo_ket_red	34	293	2.70E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.344
SRR1783600	control	2.547
SRR1783602	moderate drought stress	3.757
SRR1811619	moderate drought stress	3.943

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.915
DRR006520	Root Summer glycyrrhizin high producing strain	6.271
DRR006521	Root Winter glycyrrhizin high producing strain	5.981
DRR006522	Root Winter glycyrrhizin high producing strain	6.137
DRR006523	Root Summer glycyrrhizin low producing strain	5.613
DRR006524	Root Summer glycyrrhizin low producing strain	4.941
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.934
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.502

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.765
SRR2868004	Drought Stress (root)	4.792
SRR2967015	Control (root)	5.298

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.610
SRR9715740	Leaf	31.036
SRR9715741	Leaf	16.892
SRR9715739	Root	1.299
SRR9715742	Root	0.755
SRR9715743	Root	1.574

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.091
SRR8749028	MeJA induced 9h	2.161
SRR8749029	MeJA induced 9h	0.255
SRR8749030	Uninduced	2.134
SRR8749031	Uninduced	1.130
SRR8749032	Uninduced	1.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.140
SRR8400027	Control - Root	5.838