Gene detail

Gene detail information of Glyur000706s00025002.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46680.2	5.00E-24	homeobox 7
NR	AES72572.2	3.25E-68	homeobox associated leucine zipper protein [Medicago truncatula]
Swissprot	tr\|P46897\|ATHB7_ARATH	1.00E-30	Homeobox-leucine zipper protein ATHB-7
trEMBL	tr\|G7J874\|G7J874_MEDTR	1.00E-68	Homeobox associated leucine zipper protein {ECO:0000313\|EMBL:AES72572.2}

Sequence

Transcript Sequence

>Glyur000706s00025002.1
ATGGAGGAAAATATTGAGAATATTCAAGCATCGTCAAAAGGAAAAAATGTTAGTGATGAGCCACCCCAGAATCAAAGGAAGAAAAACAAGAAGATGGAGAACAACAAGAGGAGGTTTAGTGATGAACAGATAAGGTCACTAGAGTACATATTTGAGTCAGAGTCAAAGTTGGAGCCAAGGAAGAAGATGCAGCTTGCAAGGGATCTTGGGTTGCAGCCTAGACAAGTTGCTATATGGTTCCAGAACAGGAGGGCAAGGTGGAAATCAAAAAGGTTTCAGAAGCTGAGTTATTTGATGGAAACAACATCTCATGATGGTGGATCAAGGGAAGGGAAGGTTGCCAAGGATAATAGCACAGCCACAGAAGAAGATGGTGGTTCAGGAAGTGGATACAGGAATTGCAAGGATGAAGCAAAGCCAAGGTTTTCAGATGAGGGTAATTTGGATGATAAAGATGAAAGGTGTAGAAGGAGTGAGAGAGCTGAGGACAACAGAGGACACCAACTTGTGAGAAATATGGATGATGGTGATGATGATCATGCAGAGAATATTCCATTGGCATCATCACATGAAAAATGGTACAGTGTGGACCCAAGTGGGATCTTAGACCAATCATGCAGCAGTTCTCAATGGTTAGATTTCTGGACTTGAGAAAAAGTGCACAACCATGCTTGCTTGCTCTATGTTGCATGTTTTGGTGTTTCTTCCTCCAACAAGGAACAAAGAGTAGCCAGCAGCGATTCAAAACATTATGATAGCTCAAACAGGATGTTGGAAACTCACAAAGATGAAGTTTTGTACGCTTGATTTGATAGGGAGAGAGAGAATTAAGATAGCCTCACTCAATTCAATTGTTTAATTAGACTAGAGGATTTGGAAGAAGAAATAATATGACATATCTGTGTTTGTGCATGAGGGTGAGCCTTGGCGCAACGGTAAGGTTGCTGCCTTGTGACATGAGGGTCACGGGTTTGAATCTGGAAATAGCCTCTTATTTTGCGGAGACAAGGTTGCGTACGTCTACTCTCCCTGGACCACTCTTTATATGTGTTTGTGCATACTTGCATGCCTTTTTCTTTTCAATCCATATGCGTGTGTGTCTATGTTTTTTTTTCCATTTATGATTTTTCAAGGGGTTTCAATCTAAAACCTTTTTTTTTTTTCTTTCTCTCTCTTATATTGGCCTCTTTTATCACTATATAGCTACCCCCATATTAACAATGTATGACCATTGTGACATGACTGGGACACAGGTACAAAATGAATGTTGTGATTAGTGAGAGAATAGAGATATTTCTTGACTTCATGTAGTAGTGAATATGATGAATTTTCTTAGCTTGTCTTTCAGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00706	9840	11639	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000706s00025002.1	PF00046.24	Homeobox	35	88	5.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.717
SRR1783600	control	46.014
SRR1783602	moderate drought stress	75.092
SRR1811619	moderate drought stress	76.383

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	90.117
DRR006520	Root Summer glycyrrhizin high producing strain	88.993
DRR006521	Root Winter glycyrrhizin high producing strain	96.092
DRR006522	Root Winter glycyrrhizin high producing strain	94.745
DRR006523	Root Summer glycyrrhizin low producing strain	31.608
DRR006524	Root Summer glycyrrhizin low producing strain	28.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.517
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.344

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.790
SRR2868004	Drought Stress (root)	24.934
SRR2967015	Control (root)	26.295

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.325
SRR9715740	Leaf	11.943
SRR9715741	Leaf	14.001
SRR9715739	Root	7.187
SRR9715742	Root	32.293
SRR9715743	Root	30.389

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.268
SRR8749028	MeJA induced 9h	27.831
SRR8749029	MeJA induced 9h	7.299
SRR8749030	Uninduced	38.590
SRR8749031	Uninduced	9.726
SRR8749032	Uninduced	22.450

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.991
SRR8400027	Control - Root	48.852