Gene detail

Gene detail information of Glyur000705s00027474

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase
NR	XP_004502244.1	PREDICTED: adenosylhomocysteinase-like [Cicer arietinum]
COG	YP_003396398.1	adenosylhomocysteinase [Conexibacter woesei DSM 14684]
Swissprot	tr\|P35007\|SAHH_CATRO	Adenosylhomocysteinase
trEMBL	tr\|B9S9Y6\|B9S9Y6_RICCO	Adenosylhomocysteinase {ECO:0000256\|RuleBase:RU000548}

Sequence

Transcript Sequence

>Glyur000705s00027474.1
CCGCGAATTAAGAATGACATGAATTGGATTTGTTGGGGGTTAGAACTTAGAAGGGAAGGGAAAATGGAGCGGTGGAGGATGGATCACGAAGCAGAAGGAGCATCCGCATCGTCCATTTTAGGCATTCAAACCTATTTATAGCACCCAAAACACCACCCCNCAAACTCGACACACTCCTCCCTTTCATTCTCTCCTTCCAAAGTCACTCACCACACTCCCTCTCCCTGCCCCTCTCTCTGTAATTTTTTTTTTTTTGCAATCACAAGATGTCGTTGCTGGTAGAGAAAACAACGAGCGGTAGAGAGTACAAGGTGAAGGACATGTCCCAGGCAGACTTCGGACGCCTCGAGATCGAGCTAGCCGAAGTCGAAATGCCAGGCCTCATGGCATGTCGCGNTGAGTTCGGTCCCTCACAGCCCTTCAAGGGCGTGAAGATCACCGGCTCACTCCACATGACAATCCAGACAGCTGTCCTTATCGAGACCCTCACAGCGCTCGGCGCTGAGGTCCGTTGGTGTTCCTGCAACATCTTCTCCACACAGGATCACGCCGCCGCCGCCATCGCACGTGACAGCGCNTCNGTATTCGCATGGAAGGGTGAGACNCTCCAGGAGTATTGGTGGTGCACTGAGCGNGCACTCGATTGGGGNCCTTCCGGTGGACCAGATCTCATCGTTGATGATGGTGGCGACACCACGCTTCTCATCCATGAGGGTGTTAAGGCTGAACAGGCCTATGAGAAGAACGGACAGTTACCAGATCCGGCTTCTACTGATAATGCTGAGTTCCAGATCGTTCTTACTATCATTAGGGATGGGTTGAAGNCCGATCCTAAGAGGTACCATAAGATGAAGGATAGGATTGTTGGTGTTTCTGAAGAGACTACTACTGGTGTTAAGAGGCTTTACCAGATGCAGGCCAATGGTACCCTCTTGTTCCCCGCTATCAATGTCAATGACTCCGTCACCAAGAGCAAGTTTGACAACTTGTATGGGTGCCGTCACTCACTCCCCGATGGGCTGATGAGAGCCACTGATGTCATGATTGCCGGTAAGGTTGCAGTTGTGTGTGGTTATGGAGATGTTGGCAAGGGTTGTGCTGCTGCCTTGAAGCAGGCCGGTGCTCGTGTGATTGTGACTGAGATTGACCCNATCTGTGCCCTTCAAGCACTCATGGAAGGTCTCCAAGTCCTGACCCTGGACGATGCCGTCTCTGAGGCCGACATCTTCGTTACCACCACCGGTAACAAGGACATCATCATGGTTGACCACATGAGGAAAATGAAGAACAATGCCATTGTCTGCAACATTGGTCACTTTGACAATGAAATCGACATGCATGGCCTTGAGACCTACCCTGGCGTGAAGCGCATCACCATCAAGCCCCAGACTGATAGATGGGTTTTCCCTGATACCAACTCAGGCATCATTGTCTTGGCCGAGGGTCGATTGATGAATCTGGGATGTGCCACAGGTCACCCTAGTTTTGTGATGTCTTGCTCCTTCACCAACCAAGTCATTGCTCAGCTTGAGTTGTGGAAAGAGAAGAGTACTGGCAAGTATGAGAAGAAGGTGTATGTTTTGCCCAAACACCTTGATGAGAAGGTGGCTGCTCTTCACCTTGGCCANCTTGGAGCTAAGCTCACCAAGCTTAGCAAAGACCAGGCTGATTACATCAGTGTGCCTGTTGAGGGTCCATACAAGCCTGCTCACTACAGGTACTGAGAGATGGATGATCAAGGGATTGATTGATAGAGGGAAAAAGAATAAACGATTTTATCGTTATTGTTTCACTTTTCCTTTTGGAATTTTTCTTATTACATTTTTTCACATTTGTGGTAGATTGGGAGAGTTTTTTTTTTTAAATTTCCTAGGATTTTCAATTCCATTGGGTTGAAGGGTAAGAGCAAAATACCTATTGGTCTCTGTGAAATGAGACCAAACGGGTTTGAATAAGGCTTTGGTTGCGGGTTTTTGTGGGTTATGATTTAGTAGGATATAATATCATATTTCTGTCCTTCTTTCATATATCTTTGATAAAGAAAGAAAATAAGAAAAAATGTACTACTTCCTATCTGACGTTCAGTTTTAAACTCACTCTTATANTTTATGCTTGCGAATTAGCTCACCTTCGGAACAGCACTCTGCAAAAGGGCAGGCTATACTACCTCCAACAAAAAAAATGATACTTAAGACCAAAATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00705	116602	119702	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01251	E3.3.1.1, ahcY	EC:3.3.1.1	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006730 one-carbon metabolic process

molecular_function
GO:0004013 adenosylhomocysteinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000705s00027474.1	PF05221.12	AdoHcyase	13	484	3.00E-143
Glyur000705s00027474.1	PF00670.16	AdoHcyase_NAD	240	403	3.70E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	215.956
SRR1783600	control	216.514
SRR1783602	moderate drought stress	98.469
SRR1811619	moderate drought stress	98.084

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	125.127
DRR006520	Root Summer glycyrrhizin high producing strain	123.366
DRR006521	Root Winter glycyrrhizin high producing strain	48.360
DRR006522	Root Winter glycyrrhizin high producing strain	47.028
DRR006523	Root Summer glycyrrhizin low producing strain	76.189
DRR006524	Root Summer glycyrrhizin low producing strain	76.195
DRR006525	Leaf Summer glycyrrhizin high producing strain	119.897
DRR006526	Leaf Summer glycyrrhizin high producing strain	119.023

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	278.521
SRR2868004	Drought Stress (root)	116.617
SRR2967015	Control (root)	108.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	84.922
SRR9715740	Leaf	67.859
SRR9715741	Leaf	45.583
SRR9715739	Root	184.694
SRR9715742	Root	96.385
SRR9715743	Root	107.928

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.197
SRR8749028	MeJA induced 9h	105.407
SRR8749029	MeJA induced 9h	32.939
SRR8749030	Uninduced	72.943
SRR8749031	Uninduced	13.883
SRR8749032	Uninduced	12.329

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	177.742
SRR8400027	Control - Root	177.472