Gene detail information of Glyur000705s00027473 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23805.1 | 2.00E-21 | ralf-like 24 |
| NR | XP_003601688.1 | 1.04E-64 | Rapid alkalinization factor preproprotein [Medicago truncatula] |
| Swissprot | tr|Q9LK37|RLF24_ARATH | 4.00E-26 | Protein RALF-like 24 (Precursor) |
| trEMBL | tr|G7JAS2|G7JAS2_MEDTR | 4.00E-65 | RALF {ECO:0000313|EMBL:AES71939.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00705 | 109171 | 109572 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000705s00027473.1 | PF05498.6 | RALF | 65 | 126 | 4.90E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.516 |
| SRR1783600 | control | 24.801 |
| SRR1783602 | moderate drought stress | 19.595 |
| SRR1811619 | moderate drought stress | 19.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.342 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.807 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.156 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.538 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.309 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.917 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.769 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.144 |
| SRR2868004 | Drought Stress (root) | 43.201 |
| SRR2967015 | Control (root) | 33.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.507 |
| SRR9715740 | Leaf | 7.262 |
| SRR9715741 | Leaf | 8.105 |
| SRR9715739 | Root | 9.769 |
| SRR9715742 | Root | 16.680 |
| SRR9715743 | Root | 16.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.439 |
| SRR8749028 | MeJA induced 9h | 17.946 |
| SRR8749029 | MeJA induced 9h | 6.738 |
| SRR8749030 | Uninduced | 5.092 |
| SRR8749031 | Uninduced | 0.245 |
| SRR8749032 | Uninduced | 0.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.569 |
| SRR8400027 | Control - Root | 37.703 |