Gene detail

Gene detail information of Glyur000705s00027468

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G14030.2	selenium-binding protein 1
NR	CAC67501.1	selenium binding protein [Medicago sativa]
COG	YP_007129631.1	selenium-binding protein [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q93WN0\|SEBP2_ARATH	Selenium-binding protein 2
trEMBL	tr\|Q93WS1\|Q93WS1_MEDSA	Selenium binding protein {ECO:0000313\|EMBL:CAC67501.1}

Sequence

Transcript Sequence

>Glyur000705s00027468.1
ACATTATTTGAATGCGAATATGNACAAAGACGATATTATTGATCCCATACATACGAAACGGGAGCTGTTACATCCTACAACGTTATTTGTTTCTGCCATCACCCTTTGCATGTGAAATTGTAAATAGCTCTTCCTTTCTCATCAATCTGAATCATATTCTTCTTCCTAAGAGGTTGAGAGAGAGAGAGAGANCCGAGAGAGATGGGCACGGAGATGGAGCATGGTGTGGTGAGTAACCAAAGCAACGGTAATAATGGGTGCTGCAAATCAGGGCCAGGCTATGCTTCCCCACTTGAAGCCATGTCTGGTCCCAGAGAGACTCTGATTTATGTCACTGCTGTCTACACAGGAACAGGAATAGAGAAGCCTGATTATTTGGCTACAGTGGACGTGGATCCAAGCTCTCCAACTTACTCAAAAGTCATCCACAGGCTACCTGTGCCTTATCTAGGTGATGAATTGCACCACACTGGGTGGAACTCCTGCAGCTCTTGCCATGGAGACCCTTCAGCACAGCGAAGATTTCTCATCGTACCTGGACTGGTGTCGGGTCGCGTATATGTGGTTGACACAAAAACAGATCCAAGGTCTCCNTCTTTGCACAAAGTTGTAGAGTCTGAAGATATCGTACAAAAGACTGGATTAGCTTATCCACACACATCTCATTGCCTTGCTTCTGGTGACATAATGATCTCATGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAAGGAAGGTGGGAGAAACCAGGGCACAGTCCATTATTTGGGTATGACTTTTGGTACCAACCACGGCACAATACTATGATTAGCACATCATGGGGTGCTCCTAGTGCTTTTACCAAAGGTTTTAACTTACAGCATGTCTCTGATGGATTCTATGGGAGGCATCTTCATGTATACAGCTGGCCCGGGGGCGAACTGAGACAAACACTGGACCTTGGTGATAAGGGGCTTTTACCCTTGGAGATAAGGTTCCTGCATGATCCCGCTAAAGATACAGGTTTTGTTGGGAGCGCATTGACAAGTAACATGGTTCGATTTTTTCAGAACCAAGATGGATCATGGAGCCATGAGGTTGCCATATCAGTGAAACCACTGAAAGTGCAAAACTGGATTCTTCCTGAAATGCCTGGGCTTATAACCGATTTTCTGATTTCGCTTGATGATCGGTTTCTGTACTTTGTAAACTGGCTTCACGGCGATATAAGACAGTATAACATTGAGGACCTTAAGAATCCAATACTGACTGGCCAAGTATGGGTCGGTGGTCTTCTACAGAAAGGAAGCCCTACAGTAGCTGTGGCAGATGATGGTACAACTTGGCAATCTGATGTACCAGAGATTCAGGGAAACAAGTTGAGAGGGGGTCCTCAGATGATTCAATTGAGCTTAGATGGGAAGAGGCTGTATGTTACCAACTCACTGTTTAGTACTTGGGACAAACAGTTTTATCCAGAGATTGTGGAGAAAGGGTCCCACATGTTGCAGATTGATGTTGATACTGAGAGTGGTGGTCTGAAAATTAACCCAAACTTCTTTGTGGACTTTGGAGCTGAGCCTGATGGTCCTTCCCTTGCCCATGAGATGAGATACCCTGGTGGTGACTGCACTTCTGATATATGGATTTAAGCATAACGTATCATCATAGTTTCATTGTAATGATAATAATAATCGAGGTATCTTTCATGTAGTTAGAATAAGCAACAATACTTTAATAATGTGCTTGTTCATCTTCAACGTTTTGAAGACAGAGTTACCTCCACCTAGTTTGGGGTTATTTCTATCTCTGTGGTAACCTTAATTTCCGTTTAGTTTTGAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00705	71942	76381	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008430 selenium binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000705s00027468.1	PF05694.6	SBP56	21	488	1.80E-218

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.213
SRR1783600	control	38.364
SRR1783602	moderate drought stress	44.980
SRR1811619	moderate drought stress	45.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	71.370
DRR006520	Root Summer glycyrrhizin high producing strain	70.593
DRR006521	Root Winter glycyrrhizin high producing strain	112.506
DRR006522	Root Winter glycyrrhizin high producing strain	109.836
DRR006523	Root Summer glycyrrhizin low producing strain	40.417
DRR006524	Root Summer glycyrrhizin low producing strain	40.434
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.025
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.657

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.057
SRR2868004	Drought Stress (root)	94.026
SRR2967015	Control (root)	94.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	68.377
SRR9715740	Leaf	74.781
SRR9715741	Leaf	80.750
SRR9715739	Root	41.665
SRR9715742	Root	64.168
SRR9715743	Root	60.575

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.815
SRR8749028	MeJA induced 9h	6.880
SRR8749029	MeJA induced 9h	4.029
SRR8749030	Uninduced	20.662
SRR8749031	Uninduced	19.130
SRR8749032	Uninduced	14.711

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	71.847
SRR8400027	Control - Root	98.351