Gene detail

Gene detail information of Glyur000705s00027465.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23790.1	0	AMP-dependent synthetase and ligase family protein
NR	XP_003537522.1	0	PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Glycine max]
COG	YP_007172371.1	6.00E-167	AMP-forming long-chain acyl-CoA synthetase [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q9LK39\|AAE16_ARATH	0	Probable acyl-activating enzyme 16, chloroplastic (Precursor)
trEMBL	tr\|K7LRX9\|K7LRX9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G36690.2}

Sequence

Transcript Sequence

>Glyur000705s00027465.1
GAGTCATTTCTTCTTCGTTTTACTTCTGCTTCTGCTTCTGCTTCTTCTGCCAAATCCAAATTAACGATGGCGATTCCTTTCAGCTCCAACTTCAACTATGCTTCCACCTTCTCCTATTCTGTTTCTGTTCACGCGCTTCCTCTCTTCTTTGCTCGCCACAACNTCACCACCATGAGGAGCAAAGTTTCTCGACCTTGTTCCTTTCGAGTCCTTTGCCAATATGAATCCAAGACAGAGAAAATGCAGATAAGAAGGTGCTCCCCTTTTCTAGAAAGTTCACTACTTTCTGGTAATGGTGCTGTGGCCTCAGATGAGTGGAAAGCAGTTCCTGATATTTGGAGATCTTCTGCGGAGAAGTATGGTGATGAAGTAGCCTTAGTAGATCCATATCATGATCCTCCTTCAACTTTGGAGGATTCAATATTGGACTTTGCAGAGGGCTTGAGAGTTATTGGAGTGAGACCCGATGAGAAGCTTGCGCTTTTTGCTGATAATTCATGTCGCTGGCTTGTAGCAGATCAAGGTATGATGGCAAGTGGAACAATCAATGTGGTAAGGGGTTCAAGGTCATCAATTGAAGAACTGCTGCAAATATACAACCACTCTGAAAGTGTTGCACTAGCTGTGGACAATCCTGAAATGTTTAATCGGATTGCAAAACAGTTTTATTTGAAGGCTTCCATGAGATTTATTGTTCTGCTTTGGGGAGAAAAATCACGCCTGGTCAGTGAAGGAAACAAGGAGGTGCCAGTCTTTACATTCATGGAAGTCGTACATTTGGGACAAGAGAGTCGCAGGGCATTGTTTGATTCCCTTGATGCTAAGCAGCACTATGTGTTTGAAGCAATAAAACCTGATGACATTGCNACTCTTGTATACACAAGTGGAACTACTGGAAATCCGAAAGGTGTTATGCTTACTCATCAGAATCTTTTGCATCAGGTTAAAAACTTATCGGACATTGTACCTGCTGAAGTCGGGGATAGATTTTTAAGTATGCTGCCTCCTTGGCATGCATATGAAAGAGCTTGTGAGTATTTCATTTTCTCATGCGGTGTTGAACAAAGATACACAACCATAAGAAATTTGAAGGATGATTTGGGACATTATCAGCCACATTACTTGATTTCTGTTCCTTTAGTTTATGAAACGTTATACAGTGGGATCCAGAAGCAGATATCTACAAGCTCCCTTGTTAGAAAGCTTGTCGCACTCACATTCATANGGGTCAGCTTAGGGTACATGGAGTTTAAGCGGATTTATGAGGGTAAATGTTTAACAAAGAATCAGAAATCTCCTTCCTATCTCTATTCAATGTTGGAGTGGTTATGGGCAAGAGTTATTGCCGCAATATTATTTCCAGTTCATATGCTGGCAAAGAAACTGGTCTACAGTAAAATCCATTCATCTATTGGAATATCAAAGGCTGGAATAAGTGGTGGTGGTAGCTTATCTTCTCATGTNGATAAATTTTTTGAGGCTATTGGTTTGATCGTGCAGAATGGGTATGGTTTGACAGAAACTTCACCAGTTACTGCTGCTCGACAACTTAGTTGTAATGTTATTGGATCTGTCGGGCGTCCAATTAAGCATACAGAATTCAAAGTTGTGGATTCTGAAACTGGTGAANTTCTACCACCTGGTTCAAAGGGAATTTTGAAAGTTAGGGGCCCACAATTGATGAAGGGATACTACAAGAATCCTTCAGCTACAAATCAGGTCTTAGATAGGGATGGCTGGCTGAATACTGGTGATATAGGTTGGATTGCTCCCTCCCATTCAACTGGACGTTGTCGTAATTCTGGTGGTGTGATTGTTGTTGAAGGCCGTGCTAAAGACACTATTGTGCTTTCAACAGGTGAAAATGTTGAACCTGGAGAACTTGAAGAAGCTGCAATGAGGAGTAGCCTCATACAACAAATTGTTGTCATTGGCCAGGATAAGCGACGTCTAGGAGCTGTAGTTGTTCCTAACAAAGAAGAAGTCTTAAAGGCAGCGAAGGAATTGTCAATTATAGATTCCAATAGTTCAGATGTCAGTCAGGAACAAATGACCAGCCTAATATATAAAGAATTAAGGACGTGGACGTCAGAGTCTCCATTTCAAATTGGGCCAATCCTTCTCGTAAATAATCCCTTCACGATCGATAATGGGCTAATGACACCCACAATGAAAATTCGAAGGGATAAAGTTATGGCTCAATACAGGGACCAAATAGAGAACCTGTACAAGTAATCTTACCTAGTGCCAATGGTATGGCACAAATAATTACGGCTCAATACAGGGAGCAAATGGAGAATTTATACAAGTAAACTTACCTAATGCTAGTNGTATGGCACAGTAGAGTTTTAACTTTAGACAGTAGCAAAATCCCTAATTCTTCCTTTTGTTGTCATATTTTCTTACAGAATGGAAAATATTGTTCTCTTTCATTAAAAATTAATGTGCCAATACTTTTATTATTTAATCTTCTTACAGGATGGATAATACTTGCTGTTATCTTCATTTGAAGTTAATGTGTCAAGTTAGTTTCAACTGATTGGCGTCAAGCCGTCAANTTAGCTGAACGGGGTTAGTAAGACCTTTTCAATACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00705	49015	62043	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01897	ACSL, fadD	EC:6.2.1.3	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Fatty acid degradation	map00071
			Peroxisome	map04146
			Quorum sensing	map02024
			Adipocytokine signaling pathway	map04920
			PPAR signaling pathway	map03320

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000705s00027465.1	PF00501.23	AMP-binding	92	595	1.50E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.389
SRR1783600	control	5.654
SRR1783602	moderate drought stress	6.585
SRR1811619	moderate drought stress	6.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.513
DRR006520	Root Summer glycyrrhizin high producing strain	3.484
DRR006521	Root Winter glycyrrhizin high producing strain	8.025
DRR006522	Root Winter glycyrrhizin high producing strain	7.781
DRR006523	Root Summer glycyrrhizin low producing strain	6.243
DRR006524	Root Summer glycyrrhizin low producing strain	6.046
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.823
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.735

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.510
SRR2868004	Drought Stress (root)	19.172
SRR2967015	Control (root)	21.664

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.177
SRR9715740	Leaf	22.226
SRR9715741	Leaf	24.445
SRR9715739	Root	2.162
SRR9715742	Root	4.912
SRR9715743	Root	4.783

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.399
SRR8749028	MeJA induced 9h	11.773
SRR8749029	MeJA induced 9h	5.899
SRR8749030	Uninduced	12.175
SRR8749031	Uninduced	4.412
SRR8749032	Uninduced	5.657

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.099
SRR8400027	Control - Root	17.140