Gene detail

Gene detail information of Glyur000705s00027460

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23750.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003601704.1	0	Receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	6.00E-28	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|G7JAT8\|G7JAT8_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES71955.1}

Sequence

Transcript Sequence

>Glyur000705s00027460.1
CTCTCTTCCATTTCCATTTCTCTTCATCTAAATACTCTCTCCACGCAACAACACTACTACTACTCCATACTTGGTGTTTTCCCATTTCTCCCAAATCCTGAATGGCTGTCCCAAACCCAAAACTGAAAACCCTAGTTTCTCTCTCTACTCTCTTTCTGTGCTTCTCTCTCCTGCTCACCGCCATTGCAGACGATGGCGCGTTCATGTCGAAGCTAGCAGAAGCCTTGACCCCAACCCCGTCAGGGTGGTCGTCGACCACCGGCGGCGGCGGCGCGTTCTGCAAGTGGAGCGGCGTTAAGTGCGACGGCTCAAATCGCGTGACATCGATCAACCTGTCCTCGAAGAAACTCAGTGGAACACTCCCTCCCGATCTGAACTCGCTCTCCCAGCTAACCTCCCTNTCACTCCAGGACAACTCGCTCTCCGGCGCGTTGCCCTCACTCGCCAACCTCACCATGCTTCAAACGGTCTTCCTCGGTGGAAACGGCTTCACCTCCGTCCCTGACGGCTGCTTCCAGGGCCTCACAGGCCTTCAGAAGCTCACCATGACCGATAACCCAAACCTTGCTCCCTGGACGATTCCCTCCGAGTTGACTCAGTCCTCAAACNTAGTCGAACTCGACCTCGGAAACACAAGCCTCGTGGGTTCTCTACCGGATATTTTCTCCCCCTTGGTGAGTTTGCAGAGCCTCCGTCTCTCCTACAACAACCTNACCGGCGGTTTNCCGGAATCCTTCGCCGGATCTGGGATTCAGAACCTGTGGCTCAATAACCAGAACGACGGGTTCGGTTTCACGGGTTCCATCGACGTGCTTGCTTNCATGACCCACTTGACTCAGGTCTGGCTCCAGAAGAACCGGTTCACCGGTCCAATTCCGGATTTATCGAACTGCACTGACTTGTTTGATCTTCAGCTTCGTGACAACCAGTTAACCGGTGTGGTTCCTCCTTCTTTGATGTCACTCACTAGCTTGCAGAACGTTTCATTGGATAACAACAAGCTTCAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTGAAGGTCACTCCCGATGATGGGATCAATAGCTTCTGTTTAAACACTCCTGGGCCTTGCGATCCACGTGTCACCACTTTGCTTGATGTTGCTAAGGGTTTTGGGTACCCCCTTCANTTGGCGAATTCATGGAAAGGTAACGATCCCTGTGAAGATTGGAGCTTTGTTGTGTGTTCAGGTGGGAAGATTATTACTGTGAACTTGCCAAAGCAGAATTTGAATGGAACCATTTCACCTGCATTTGCCAATTTAACTGATTTGAGGAACTTGTATCTTAATGGTAACAATTTGAGTGGTTCGATACCGGGGAGCTTGACGGGTTTGACGCAGCTTGAAGTTCTGGATGTTTCTAATAACAANCTATCTGGGGAGATTCCCAAGTTTGGGCCTAAGGTGAAGTTCAATTATGCAGGTAATGCTTTGATTGGGCGTTCTGGTGGTGGTGGAGGAAGTGAAACTACTCCATCAACTGGTTCTGGTGATGCACCTAGTGGAAGTCCATCTGAAAAGGAGANTGGTTCTTCTCTATCACCTGCTTGGATCGCAGGTATAGCTGTTATTGCTGTGTTTTTTGTTGCTGTGGTGTTGTTTGTCTTTTGTAAGTGTTATGTTAAAAACCGGCGGCATGGGAAATTTGGAAGGGTTAATAACCCTGCAAATGGAAAAGGTGAGGTTAAGATTGATGTGATGNGTGTTTCCAATTCTAATGGATATGGTGGGGTTGCGAGCGAGTTGCAGAGCCAGGGTAGTGACCGTAGTGACCTTCAGGTTTTTGAGGGTGGGAATGTTACNATCTCAATCCAAGTTCTTCGGCAAGTGACCAATAATTTCAGTGAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGGACTAAGATCGCTGTGAAGAGGATGGAGTCTGCTGCAATGGGGGGAAGTAAGGGAATGAATGAGTTCCAAGCAGAGATTGCTGTTCTCACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATATTGCATCAATGGCAATGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACACAACATCTGTTTGATTGGCGTGAAAATGGGTGTGCTCCTTTGACCTGGAAGCAGAGGGTAGCAATCGCTTTGGATGTTGCAAGGGGAGTGGAGTACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCAAACATACTATTGGGTGATGACATGAGGGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAATATTCGGTCGAGACAAGGTTGGCTGGAACATTTGGATATCTGGCACCTGAATATGCAGCCACTGGAAGAGTGACAACCAAAGTAGATGTTTACGCATTTGGAGTAGTTCTGATGGAACTGGTTACAGGTAGAAGGGCATTGGATGATACTATGCCTGATGAGAGGTCTCATTTGGTTTCATGGTTCCGTAGGGTACTAATTAACAAGGAGAACATCCCAAAGGCAATTGATCAAACACTGAACCCAGATGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGGGAACCGTACCAAAGGCCGGATATGGGGCATGCAGTGAATGTCCTGGTTCCTCTGGTAGAGCAATGGAAGCCTACCAACCATGAAGAAGAAGAAGGTTATGGCATTGACCTTCAAATGAGCCTTCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACCTCCACAATGTTCAATGACACGTCCTTCTCACAAACNCAATCAAGCATTCCAGCAAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAACAAAAAAAAATGATNAACATGACATCTTCCACTTGTTTCTCAGTTGAGATGAGAAGGTTAAGCTGTTTTGATCCAGCAGCATCACGAAATTGTATCACAAATTTCATTTATTTATTTTTTAAAATGTCGATTTTTTTGGTGTTCTTGCAATATCTCATGTACAAGTCTGATGTCCTTTATTGAATTTGTTTAGAGCTAGCGAATTGGTTCAAGTGGGTGTTTGGGTTCTTAGCTGAGAAGTATTATAGAAATGTTAATTGTATGATATATATATTATAACATTTTTTCAATCAGAAGAATATTTATTGAATATAGCTGTTTTTTTCCAATTAGCAGATAATGGTGTTTTGCCCCTTGTCTTTTTGACCAAGCATTTGTCAGTTGCAGTGTTTCCAATTCATTACCAACGCTGCGTAAATCAACAGCAAGTAACCAAATGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00705	6575	10857	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000705s00027460.1	PF08263.7	LRRNT_2	30	68	0.00023
Glyur000705s00027460.1	PF13855.1	LRR_8	95	152	3.50E-08
Glyur000705s00027460.1	PF08263.7	LRRNT_2	336	370	0.15
Glyur000705s00027460.1	PF12799.2	LRR_4	398	433	2.70E-07
Glyur000705s00027460.1	PF00069.20	Pkinase	591	862	8.20E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.192
SRR1783600	control	14.367
SRR1783602	moderate drought stress	11.550
SRR1811619	moderate drought stress	11.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.054
DRR006520	Root Summer glycyrrhizin high producing strain	35.384
DRR006521	Root Winter glycyrrhizin high producing strain	7.459
DRR006522	Root Winter glycyrrhizin high producing strain	7.325
DRR006523	Root Summer glycyrrhizin low producing strain	92.489
DRR006524	Root Summer glycyrrhizin low producing strain	92.639
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.608
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.745
SRR2868004	Drought Stress (root)	44.435
SRR2967015	Control (root)	45.512

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.053
SRR9715740	Leaf	45.521
SRR9715741	Leaf	41.561
SRR9715739	Root	52.073
SRR9715742	Root	109.325
SRR9715743	Root	100.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	70.069
SRR8749028	MeJA induced 9h	98.217
SRR8749029	MeJA induced 9h	79.498
SRR8749030	Uninduced	117.165
SRR8749031	Uninduced	44.615
SRR8749032	Uninduced	46.450

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.738
SRR8400027	Control - Root	53.880