Gene detail information of Glyur000704s00022941 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20935.1 | 8.00E-15 | |
| NR | XP_003601356.1 | 4.20E-45 | hypothetical protein MTR_3g079820 [Medicago truncatula] |
| trEMBL | tr|G7J6M5|G7J6M5_MEDTR | 2.00E-45 | DUF3148 family protein {ECO:0000313|EMBL:AES71607.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00704 | 78184 | 79722 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000704s00022941.1 | PF11347.3 | DUF3148 | 58 | 93 | 8.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.519 |
| SRR1783600 | control | 1.974 |
| SRR1783602 | moderate drought stress | 2.072 |
| SRR1811619 | moderate drought stress | 2.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.860 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.207 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.609 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.424 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 44.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.899 |
| SRR2868004 | Drought Stress (root) | 1.112 |
| SRR2967015 | Control (root) | 0.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.155 |
| SRR9715740 | Leaf | 4.161 |
| SRR9715741 | Leaf | 45.923 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 3.382 |
| SRR9715743 | Root | 2.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.541 |
| SRR8400027 | Control - Root | 0.609 |