Gene detail

Gene detail information of Glyur000704s00022940.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20950.2	2.00E-140	Glycosyl hydrolase family protein
NR	XP_003601350.1	0	Beta-D-glucosidase [Medicago truncatula]
COG	YP_003265703.1	2.00E-103	glycoside hydrolase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LJN4\|BXL5_ARATH	4.00E-07	Probable beta-D-xylosidase 5 (Precursor)
trEMBL	tr\|G7J6L9\|G7J6L9_MEDTR	0	Glycoside hydrolase family 3 protein {ECO:0000313\|EMBL:AES71601.1}

Sequence

Transcript Sequence

>Glyur000704s00022940.1
AACAAGGTTGCAGCTTGTGCTAAGCACTTTGTCGAAGATGGTGGCACAAACAAGGGTATCACTGAGAATAATACTTTGATCAGTTACAAAGGATTGCTTAGGATTCAGATGCCAGCATACTATGACTCTATTATCATGGGCGTTTCAACAGTAATGGTCTCCTACTCTAGCTGGAATGGGAAGAAGATGCATGCCAACCGAGATCTTGTCACCGGTTACCTCAAGAACAAACTGCTGTTCAGGATTATGGTTCCCAATAATTTCACGGAGTTCATTGATGACCTAACCTATCAAGTAAAGAACAATATTATCCCGATGAGCAGGATTGATGATGTTGTGGCAAGAATCTTAAGGGTAAAATTTGTCATTGGCCTATTTGAAAATCCACTTGCTGATCTAAGCCTCGTGGACCAATTGGGTAGCAAGAGTCTGTTTTTTGATAAAATATCTTGTCTTACACATGAGCATAGGGAGTTGGCAAGAGAAGCTGTCCGAAAATCACTTGTGTTGCTGGAGAGTGGTAAATATGTTGAGAAGCCACTGCTTCCCCTTCCCAAGAAAGCTGCAAAAATCCTGGTTGCAGGAAGTCATGCTGACAATTTGGGTTATCAATGTGGAGGATGGACAATTACCTGGCAGGGGCTCGGTGGCAATGATCTTACAGCGGGTACAACTATCCTTGATGCTTTAAAACAAACAGTTGATCCTGCAACTAAAGTTGTCTACAACGAAAATCCAGATGCGAATTTTCTCAAGTCAAACAAACTTTCCTATGCCATAGTTGTTGTGGGAGAACACACTTATGCCGAAACACTTGGTGACAGTCTGAATCTAACCATAGCGGAGCCAGGTCCAAGCACTATCACAAATGTATGTGGATCTATTCAATGTGTAGTTGTTCTCATCACTGGCCGCCCAATTGTGATTCAGCCATATCTGTCGAAAATTGATGCACTTGTAGCTGCATGGCTTCCTGGGACTGAAGGTCAAGGTGTTGCTGATCTTCTCTATGGTGACTATGAGTTCACTGGCAAGCTGGCAAGGACATGGTTCAAGACAGTTGACCAGCTCCCAATGAATGTTGGTGACAAACATTATGATCCTCTATTTCCATTTGGATTCGGGTTGACTACAAACCTTACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00704	71347	73179	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05349	bglX	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000704s00022940.1	PF00933.16	Glyco_hydro_3	2	80	1.10E-16
Glyur000704s00022940.1	PF01915.17	Glyco_hydro_3_C	178	377	1.20E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.883
SRR1783600	control	0.521
SRR1783602	moderate drought stress	0.572
SRR1811619	moderate drought stress	0.635

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.648
DRR006520	Root Summer glycyrrhizin high producing strain	0.810
DRR006521	Root Winter glycyrrhizin high producing strain	0.049
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.891
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.117

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.820
SRR2868004	Drought Stress (root)	0.793
SRR2967015	Control (root)	1.381

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.166
SRR9715740	Leaf	1.587
SRR9715741	Leaf	1.106
SRR9715739	Root	0.324
SRR9715742	Root	0.366
SRR9715743	Root	0.382

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.022
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.224
SRR8400027	Control - Root	2.510