Gene detail

Gene detail information of Glyur000704s00022939

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	3.00E-98	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_004516106.1	0	PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O82500\|Y4117_ARATH	1.00E-94	Putative disease resistance protein At4g11170
trEMBL	tr\|A0A072V7A5\|A0A072V7A5_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:KEH34050.1}

Sequence

Transcript Sequence

>Glyur000704s00022939.1
AGAAAAGTGTAATTTAGCCTAAATTTTATATATTTACCTATATAATTCTATTTTTTTCCTTTTGAATTTGTTAGATTTGTAACTTGTTCTGCCCCTCTCTCTCTTCCCCCTTTTCATATGCTAGGAGTGAGTCCGACTTAATCAATGCCATTGTCGAAGATGTTTTGGAAAAACTGAAACCTATATACCCATCATATGAAATCAAGGGACTTGTTGGAATTGAGGAAAAAATTGAACAGGTGGAATCTTTACTGAATATTGGGTCAAACTCAAATGATGTTAGAATCGTTGGAATATGGGGAATGGGTGGCATGGGTAAGACCACCCTTGCTACTACTTTACATGCTAAACTGCATTCCCAATTTGAAGGTCACTGCTTTGTCGCAAAGGTAAGAGAAAAATATCCAAACAAGTGTGGACTCAATTTTGTACTGAGGGATCTTTTTTCAGCATTGCTAAAGGAAGAAATTCGCCGTGATGCACCTTGGGTAGACATGGCCTTCTTCCAGAGAAGGCTTGCATGTAAAAAAGTTTTCATTGTGTTGGACGATGTGGATACCTCAGAGCAAATAGAAGATCTTACCGATTGCTTGGGACCAGGTAGCAGAGTCATTGTTACAACTAGAGATAAGCAAGTATTTAGCCAATCTGGTGACAGTGAAATATACGCGGTCAAGGAATTGAACTTTCATGATTCTCTTCANCTATTTTGTTTGACTGCCTTCAGAGAAAAGCATCCTAAAATTGGATATAAGGATCTATCAAGAAGAGTAAGTGACTATTGCAATGGCAATCCTTTGGCTTTAACAGTTTTAGGTGCAAATCTCCGTTCAAAAAGCNTCAAATTTTGGGAGTGCGAATTGGATAAGCTCCAAAAGATTCCCAATGTGAAAATTCATGATGTGTTAAAATTGAGTTTTGATGGCTTAGACCGTTTCCAAAAGGACATATTCCTAGACATTGCATGCCTAATGACGATGACAACATATACTTATTGGTGGTTTATTGATCGTGCAACAAGTGTATTGGACGCTTGTGGTTTCCATGCAGTAAGTGGCATAGAAGTTCTTCAAGATAAAGCTCTCATACAACTAGATGGTATGATTATAATGCATGATTTGATACGAAAAACGGGACAGGAGATTGTTAATCAAGAATCAAAAGACCCCGGAAAACAAAGTCGATTGTGGAGAACTGAAGAAGTGTGTCATGTATTGAAGAAAAACAAGGGAACTAAAGTTGTTGAAGCAATAAAGCTCGATATGTCTGAAGTAGTTGAGGATCTAAACCTGGGCCCTGATTCCTTTAAAAGGATGATTAACTTGAGATTTCTTGAAATCTATGGTAGCTGCAATGGAATTAAAAATGTGTACTTCCCTGACGGTCTTGGGTGGTTGTCTGATGAATTGAGACANCTTCACTGGCGTGCATTCAGTCTTGAGTCATTGCCACCAAACTTTTGTGCTGAAATGCTGGTAATGCTTCACATGCGTGATAGCCGGCTGATAAAGCTTTGGGATGGAGTTCAGGATCTTGTGCATTTAAAGGGAATTGATCTTGGAGGCTCCAAAGATCTAATTGAGGTCCCGGACTTATCTAAGGCACCAAATCTCCAAAGAGTGTATCTTAGGGGTTGTGTAAGCCTGCGTCAGCTCCATCCATCCATTTTATCTCTGCCCAAGCTTACGCATCTAGATTTACNAGGTTGCAAAAAGATTGAAGGCCTTAAAACCAACATTCATTCAAAATCTCTCCGTGAACTCNATCTCGAAGAATGTTCCTCTCTCACGGAATTCTCGGTGACATCGGAGGAAATGACGTGGCTGACCTTAAGTGGCACCGCCATACGTGAATTGCCGTCATCCATTTGGCGTAACAGCAAACTTACTTCTCTCGAACTGACTGAATGTATCTATCTTAACACTGTTGGGAACAAGTTATCCAATGATCCAAGACTGAGGTCTCTTACATGGCTGCTCCTTTGTCGGTGCACACAGATCAATGCTTCCAATCTGGGGTCCATCCTGGGTGGTATACAGTCTTTACAATGGTTAGATTTGAGTGGGTGTTGCAACTTAGAAGCCATCCCCCACAACATCCAAAACCATTCGAAGTTGAAAGCGCTTTGGTTAGATGATTGCNGGAAGCTTGTGTCTCTACCAGCAGAGCTCCCGCCATCCCTGGAATTTTTGGCAGCCGTTAATTGCACTTCTCTGGACACAGAATCTACTCAAGGGTCAGTGCATGAGAACATGTTGCAAAGCATGTCAGACATGTCCTGTATACCCGATGAAAAAGAATATCGGGGTGAGCCTTTCTACTTATTTCCAGGAGACCAAGTTCCGGCCAAGTTTAGGTTTCATATGAGCACAGGGGCTTCAATAACTATTCCTCCTATCCCCAAATCTGACTTCCGCGCTTTCATTTTTTGCATCATTCTTTCTGAGGGCCTACATCATCTTTACAAAACAACACATAGCCTTGGGTTTTCTATCTATGAACCCGGCAAAGAAGTCGACGCAAATTGGTCTTGTCTTCCTGAGGAGTGGCCTTCTGATGTGACCTTAATCTCAGATCACGTGTTGGTAAGCCGGTATATTAACCACAAGATACGAGAAAATGGAGATCATAACCTGTCATTTGAATTCACACGTTTAGTTTGCGATGAAGAAGGTGATAGTTATTGGTCAAGGGAGGGGATAAAGGGGTGTGGGGTGTTGCCATTAAATGCCTGTGAAATGGGGTTGGACTTGGAGGAGCTGGGTGGTCTGGACTACTCGAATTATGAAAACGAAGATGACCACCACCACCAGGAACAGCTTGTTATGAAACTCATTCACCCCACTTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00704	64982	68147	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000704s00022939.1	PF00931.17	NB-ARC	1	226	1.60E-32
Glyur000704s00022939.1	PF00560.28	LRR_1	580	601	0.018

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.942
SRR1783600	control	8.969
SRR1783602	moderate drought stress	3.253
SRR1811619	moderate drought stress	3.172

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.745
DRR006520	Root Summer glycyrrhizin high producing strain	3.489
DRR006521	Root Winter glycyrrhizin high producing strain	1.211
DRR006522	Root Winter glycyrrhizin high producing strain	1.353
DRR006523	Root Summer glycyrrhizin low producing strain	0.232
DRR006524	Root Summer glycyrrhizin low producing strain	0.271
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.040
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.311
SRR2868004	Drought Stress (root)	7.138
SRR2967015	Control (root)	4.711

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.272
SRR9715740	Leaf	87.829
SRR9715741	Leaf	85.621
SRR9715739	Root	8.632
SRR9715742	Root	53.252
SRR9715743	Root	42.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.568
SRR8749028	MeJA induced 9h	0.838
SRR8749029	MeJA induced 9h	0.332
SRR8749030	Uninduced	0.534
SRR8749031	Uninduced	0.164
SRR8749032	Uninduced	0.268

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.099
SRR8400027	Control - Root	21.393