Gene detail information of Glyur000704s00022938 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20935.1 | 5.00E-32 | |
| NR | XP_003601356.1 | 1.68E-70 | hypothetical protein MTR_3g079820 [Medicago truncatula] |
| trEMBL | tr|G7J6M5|G7J6M5_MEDTR | 6.00E-71 | DUF3148 family protein {ECO:0000313|EMBL:AES71607.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00704 | 53483 | 54753 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000704s00022938.1 | PF11347.3 | DUF3148 | 58 | 119 | 3.40E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.689 |
| SRR1783600 | control | 0.624 |
| SRR1783602 | moderate drought stress | 0.844 |
| SRR1811619 | moderate drought stress | 0.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.567 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.561 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.409 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.224 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.495 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.363 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.449 |
| SRR2868004 | Drought Stress (root) | 0.656 |
| SRR2967015 | Control (root) | 0.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.937 |
| SRR9715740 | Leaf | 8.568 |
| SRR9715741 | Leaf | 5.852 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.235 |
| SRR9715743 | Root | 0.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.859 |
| SRR8749028 | MeJA induced 9h | 2.327 |
| SRR8749029 | MeJA induced 9h | 1.268 |
| SRR8749030 | Uninduced | 3.446 |
| SRR8749031 | Uninduced | 0.912 |
| SRR8749032 | Uninduced | 2.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.179 |
| SRR8400027 | Control - Root | 0.054 |