Gene detail information of Glyur000703s00022095 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15850.1 | 1.00E-174 | RNA helicase 1 |
| NR | XP_004504551.1 | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cicer arietinum] |
| COG | NP_925271.1 | 2.00E-35 | ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421] |
| Swissprot | tr|Q7FGZ2|RH1_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 1 |
| trEMBL | tr|G7KG11|G7KG11_MEDTR | 0 | DEAD-box ATP-dependent RNA helicase {ECO:0000313|EMBL:AES99198.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00703 | 37101 | 43303 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000703s00022095.1 | PF00270.24 | DEAD | 54 | 283 | 1.40E-32 |
| Glyur000703s00022095.1 | PF00271.26 | Helicase_C | 372 | 420 | 1.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.391 |
| SRR1783600 | control | 17.446 |
| SRR1783602 | moderate drought stress | 35.871 |
| SRR1811619 | moderate drought stress | 35.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.092 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.534 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.203 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.349 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.052 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.588 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.985 |
| SRR2868004 | Drought Stress (root) | 8.889 |
| SRR2967015 | Control (root) | 10.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.903 |
| SRR9715740 | Leaf | 8.613 |
| SRR9715741 | Leaf | 3.533 |
| SRR9715739 | Root | 5.605 |
| SRR9715742 | Root | 10.702 |
| SRR9715743 | Root | 10.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.742 |
| SRR8749028 | MeJA induced 9h | 17.536 |
| SRR8749029 | MeJA induced 9h | 21.492 |
| SRR8749030 | Uninduced | 3.453 |
| SRR8749031 | Uninduced | 2.137 |
| SRR8749032 | Uninduced | 5.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.960 |
| SRR8400027 | Control - Root | 12.791 |