Gene detail

Gene detail information of Glyur000703s00022089

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G37230.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004488235.1	PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Cicer arietinum]
Swissprot	tr\|Q9ZUU3\|PP190_ARATH	Pentatricopeptide repeat-containing protein At2g37230
trEMBL	tr\|A0A072V5N3\|A0A072V5N3_MEDTR	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:KEH37314.1}

Sequence

Transcript Sequence

>Glyur000703s00022089.1
ATGGCTTTCGTTTCCAATTCGAAGCTTCTCCAATGGCGACCCACTCTCCATCCCACCGTCTTTCCCNACCCTCTCTCCCGCCTCTCCACCTCCACCTCCATCGCCGAGCCTCTCTCCGAACCCGACCACCACCATTCTCCCCCCGATCCTCTCCCCCAACCCCAACCCTCCCACCATTCCCGACCCTCCCAACCTTCTCAACCCAACCCGGAGCTCATAATCTGCCGCATGTTGGCGAACCGTGCCTGGACCACCCGGNTACAGAACTCGATCCGGTCCATCGTCCCCCGGTTCGACCGCTCCCTCGTCTGGAACGTCCTCCACGGTGCCACCAACAACCCCGACCAGGCCCTCCGCTTCTACCGCTGGGTCGAACGTGCCGGTTTGTTCTCCCACGACAGAGACACCACCCTCAAGATGATTCAGATCCTCACCCGCTACTCCAAGCTCAACCACGCTCGCTGCATCCTCCTCGACCTCCCCAAGAAGTCCCTCCCCTACGACGAGGACATGTTCGTCGCCCTGATCGACGGTTACGGCCGCGCCGGCATCGTTCAAGAAGCCGTTAAGATCTTCCAGAAGCTTAACGACCGNACCGTTAAGTCCTACGACGCTCTGTTCAAGGTGATTCTCCGGCGGGGACGGTACATGATGGCCAAAAGGTACTACAATGCAATGCTCAGGGAAGGTATTGAGCCTACTCGCCACACTTATAATATACTTCTATGGGGTATGTTTTTGTCTCTTAGATTGGACACTGCAACTAGATTTTATGAGGACATGAAAAGTAGGGGCATTTCGCCTGATGTTGTCACTTATAACACCTTGATCAATGGTTATTATCGGTTTAAGAAGGTCGAGGAGGCTGAGAATTTGTTTGTGGAGATGAAGGGGAGGAATATTGCTCCTAATGTCATCAGCTATACTACCATGCTGAAAGGGTCTGTTGCCGCGGGGCGGATTGACCGTGCTCTTGAGGTTTTTGAGGAGATGAAGGNATGTGGTATTAAGCCCAATGCTGTTACCTTCTCGACGCTGTTGCCGGGGCTGTGTGACGCGGATAAGGTGGTTGAGGCTAGAAATGTTTTGGGGGAGATGGTGGAGAGATATGTTGCCCCTAAGGATAATGCCGTATTCATGAAACTGCTGACTTCCCAGTGTAAGTCTGGTGACTTGGATGGGGCTGCCGATGTGTTGAAGGCGATGATACGCCTTAGCATTCCCACGGAGGCTGGTCACTATGGCGTCTTGATTGAGAATTTCTGCAAGGCCAATGTGTTTGACAGGGCCGAGAAATTGTTGGACAAGTTAATTGAGAAAGACATCATCTTGAGGCCGCAGAGTTCTTATGAATTGGAGCCTAGTGCGTATAACCCGATGATTAAGTATCTGTGNGACCATGGGCAGACTGGGAAAGCAGAAACACTATTCCGCCAGTTGATGAAAAAGGGTGTCCTGGATTCGGTTGCTTTTAATAATTTGATCCGTGGTCACGCGAAAGAAGGAAACCCTGATTCTGCACTTGAGATCGTAAAGATCATGGGCAGGAGAGGGGTTCCTAGAGATGCAGATTCCTACAAATTGCTTATTGAGAGTTACTTGGGGAAAGGAGAGCCAGCTGATGCTAAAACGGTTTTGGACAGNATGCTTGAAAGTGGGCATCTACCTGAATCATCCCTTTACAGGTCAGTTATGGAGAGTTTGTTTGAAGATGGCAGGGTCCAAACTGCAAGCAGAGTAATGAAAAGTATGGTGGAGAAGGGGGTGAAGGAGAATATGGACTTGGTTTCGAAGATATTGGAGGCCCTTCTCATGAGAGGTCATGTTGAAGAAGCTCTGGGCCGAATTGATTTGCTTATGCTTAATGGGTGTGAGCTTGATTTAGACCACCTTTTATCTGTTCTTTGTGAGAAAGAAAAGACGATTGCTGCTCTCAAACTGTTAGATTTTGTTCTCGAGAGAGACATCATCATAGGTTTTTCAATCTATGATAAGGTTTTAGATGCTCTCTTAGCAGCAGGGAAGACCCTCAATGCACATTCCATCTTATGTAAAATTCTGGAGAAAAGAGGTGCAACGGATTGGAGCAGCCGCGATGAGCTAATCAAGAGCCTTAATNAGGAGGGGAACACAAAGCAAGCTGATGTTTTGTCGAGAATGATCAAGGAAAAAGAGGGAAGTCCTCTAAAGAGAGAGGGAAAGAAGAAAGCAACTCACGCTACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00703	6031	8256	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000703s00022089.1	PF01535.15	PPR	171	196	0.0039
Glyur000703s00022089.1	PF13041.1	PPR_2	200	244	4.90E-08
Glyur000703s00022089.1	PF13041.1	PPR_2	268	314	9.20E-18
Glyur000703s00022089.1	PF12854.2	PPR_1	335	367	4.20E-08
Glyur000703s00022089.1	PF13812.1	PPR_3	380	407	0.21
Glyur000703s00022089.1	PF01535.15	PPR	414	442	0.06
Glyur000703s00022089.1	PF01535.15	PPR	456	485	0.077
Glyur000703s00022089.1	PF13041.1	PPR_2	487	532	1.10E-07
Glyur000703s00022089.1	PF13812.1	PPR_3	560	590	0.15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.031
SRR1783600	control	15.467
SRR1783602	moderate drought stress	13.765
SRR1811619	moderate drought stress	14.053

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.296
DRR006520	Root Summer glycyrrhizin high producing strain	22.265
DRR006521	Root Winter glycyrrhizin high producing strain	5.994
DRR006522	Root Winter glycyrrhizin high producing strain	5.764
DRR006523	Root Summer glycyrrhizin low producing strain	19.834
DRR006524	Root Summer glycyrrhizin low producing strain	19.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.739
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.982

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.360
SRR2868004	Drought Stress (root)	11.027
SRR2967015	Control (root)	12.717

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.063
SRR9715740	Leaf	5.928
SRR9715741	Leaf	4.041
SRR9715739	Root	14.949
SRR9715742	Root	18.939
SRR9715743	Root	18.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.282
SRR8749028	MeJA induced 9h	12.375
SRR8749029	MeJA induced 9h	13.097
SRR8749030	Uninduced	4.202
SRR8749031	Uninduced	1.532
SRR8749032	Uninduced	2.907

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.337
SRR8400027	Control - Root	18.625