Gene detail

Gene detail information of Glyur000702s00024649

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76010.1	1.00E-56	Alba DNA/RNA-binding protein
NR	NP_001239854.1	1.24E-167	uncharacterized protein LOC100818986 [Glycine max]
trEMBL	tr\|C6TE19\|C6TE19_SOYBN	5.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G40120.1}

Sequence

Transcript Sequence

>Glyur000702s00024649.1
ATGTGTGACAAGGGGAGAGTGGACTTGGAAAAGGAGTTGGTTAGGGCAGTTTGGAGAGTGCGTATGGATCGGTACCAGAAGGTGGAGAAGCCAAGAGCNGAAACGCCAATCGATGAAAACGAGATCCGGATTACTAGTCAGGGGAGGATGCGGAACTATATTACTTATGCCATGAGCTTGCTTCAGGAAAAGGGTTCTAATGAAATTGTTTTCAAAGCAATGGGNCGAGCTATCAACAAAACAGTAACAATTGTGGAGTTGATCAAGAGGAGAATTGTGGGTCTCCACCAGAATACCNCAATTGGATCCACTGATATCACTGATACATGGGAGCCCCTAGAGGAAGGCCTCCTTCCCTTAGAGACAACAAGGCATGTGTCNATGATAACAATTACCCTCTCTAAGAAGGAACTTGATACATCATCTGTGGGGTATCAGTCTCCGTTACCGGCTGACCAGGTGAAGGCTTCCACAGATTTTGATTATGACGGAGAGGGTTCACCAAATGGCCGTGTTCGGGGTCGTGGTGGTCGTGGCAGGGGTAGGGCAAGAGGGAATGGTTTTATTTCAGCTGATTACGAGGATGGTGGTTGGGATCGTAATAGAGGAAACCCTAGGGGCAGGGGTAGAGGAAGGGGACGTGGCTTCCGTGGTCGTGGAAGGGGAGGATACAATGGGCCCTATGTTGATATGCAGCAAGATGGAGGATACAACCATGATGTACCCCAAGGCCGTGGTCGTGGCCGTGGAAGGGGGGGATATCGTGGAAGGGGTCGTGGCTTAAGATCCAATGGGCCGATCCAGGCAGCTGCCTGAGGCAACCAGTGAGGGCTGCCTTTAGTGCAGTGCACATGACTTGACTTNAGTGAAGGAATGTTTTGTCTACTTTTATGTTTTCTTTTTGCTTTATTCCTTCAATTTTCTCCATTACCCCCTTCAATTTTCTCCGTTTCATCCAGTAGGACATTTTCTTCTTACAGTTTCTGTAGACTTAGTTTGAGACTGCTGCCACATATGGCAGCCCCTTCATGTTTTAGACTTTGGTCAGATACTCAGATGCTTGAACAGTTGTACTTCTGTTTTGGCCCTGAATCTTCATTCTTTAATTTTTATTTTCTAGAGATGTGTTTAAAATTGATTTGTTTTTTTTTTTTCCTTTCCTTCTGGCAGCATATTTTGTTTTGTTCATAGTAATGAAGAAAAGACTGTGCTGAGGTAGAATGCGTGGTTTGATTTAGCTGGACAATTGTATTAGATTAGATGGATACTATTTTCTTCTAGCAGAGATACTTCAAAATTTTGCAGCTCGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00702	103027	107006	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000702s00024649.1	PF01918.16	Alba	40	104	2.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.804
SRR1783600	control	52.790
SRR1783602	moderate drought stress	64.649
SRR1811619	moderate drought stress	65.049

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	103.985
DRR006520	Root Summer glycyrrhizin high producing strain	104.174
DRR006521	Root Winter glycyrrhizin high producing strain	93.234
DRR006522	Root Winter glycyrrhizin high producing strain	91.797
DRR006523	Root Summer glycyrrhizin low producing strain	100.170
DRR006524	Root Summer glycyrrhizin low producing strain	100.855
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.916

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	236.253
SRR2868004	Drought Stress (root)	196.950
SRR2967015	Control (root)	191.237

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	104.228
SRR9715740	Leaf	101.973
SRR9715741	Leaf	99.795
SRR9715739	Root	145.063
SRR9715742	Root	114.240
SRR9715743	Root	107.630

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	400.233
SRR8749028	MeJA induced 9h	143.447
SRR8749029	MeJA induced 9h	214.032
SRR8749030	Uninduced	81.670
SRR8749031	Uninduced	81.009
SRR8749032	Uninduced	135.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	202.331
SRR8400027	Control - Root	208.960