Gene detail

Gene detail information of Glyur000702s00024646.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G48730.1	glutamate-1-semialdehyde 2,1-aminomutase 2
NR	XP_003604059.1	Glutamate-1-semialdehyde 2,1-aminomutase [Medicago truncatula]
COG	YP_007060176.1	glutamate-1-semialdehyde-2,1-aminomutase [Synechococcus sp. PCC 6312]
Swissprot	tr\|P31593\|GSA_TOBAC	Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic (Precursor)
trEMBL	tr\|G4W9I5\|G4W9I5_MEDTR	Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313\|EMBL:AES74310.1}

Sequence

Transcript Sequence

>Glyur000702s00024646.1
ATGCCTGGAGGTGTTAATTCCCCTGTCCGTGCCTTCAAATCAGTTGGTGGACAACCAATTGTGGTTGATTCAGTGAAGGGGTCTCGCATGTGGGACATCGATGGCAATGAATACATTGATTACGTGGGCTCTTGGGGGCCAGCAATAATTGGTCACGCACATGATAAGGTACTTGCTGCCCTGGCTGAAACAATGAAAAAAGGAACCAGCTTTGGGGCACCTTGTTTGCTGGAAAATACTTTAGCTGAAATGGTCATCTCTGCAGTTCCCAGCATAGAAATGGTCCGGTTTGTTAATTCAGGCACAGAAGCGTGCATGGGAGTGCTGCGCCTAGCCCGTGCTTTTACCGGGAAGCAGAAGATCATCAAGTTTGAGGGCTGTTACCATGGCCATGCTAATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTCGCCACTTTAGGACTTCCTGACTCCCCTGGTGTTCCTAAGGCCACCACTGCGGACACCCTCACAGCACCCTTCAATGACATCTTAGCCATTGAAAATCTTTTTCAGAAGCACAAAGGAGAGATTGCAGCAGTCATCCTTGAACCTGTTGTAGGAAACTCTGGCTTCATTGTTCCTAAAGTCGAGTTTCTTGATGCCATTCGCAAGATCACNAACGAGAACAATGCACTTCTTATCTTTGATGAAGTTATGACCGGGTTCCGTTNGTCATATGGGGGAGCTCAAGAATATTTTGGCATTGTTCCTGACCTAACAACTCTAGGAAAAATCATTGGTGGAGGTCTTCCAGTAGGTGCATATGGGGGGAGGAGGGATATCATGGAAATGGTGGCACCAGCAGGGCCTGTATACCAAGCTGGAACCTTGAGTGGGAACCCTTTGGCAATGGCTGCAGGCATAGANACCCTGAAGCTTATTAAGGAACCAGGAACTTATGAGTACTTAGATAAAATCACNGGTGAACTTGTTCAAGGTATTCTTGAAGTTGGGAAGAGGGCAGGACATTNTATGTGTGGTGGACATATAAATGGGATGTTTGGTTTTTTCTTCACTGAAGGACCTGTCTGCAATTTTGGAGATGCTAAAANGAGTGATGCAGCCAAGTTTGCTAGGTTCTACTGGGGAATGTTGGAGCAAGGTGTGTATTTTGCTCCTTCACAATTTGAGGCTGGGTTCACCAGCTTGGCACATACTATGGAAGACATCAAAATGACAGTAGCAGCTGCTGAGAGGGTTTTGCNGCAGGTATGATTGATGATATATACTATTGGAGTTATTCATATGTCCATGTCTTTCACTTTCAATACTAATTTGTGGATCTATCAATGTATACAGAGTATTACAGCTATGTTTCTTTTTTTAAAAAAAATCAGTATTTTTCTTCNAGTTTTTCATTTTAAACCCAAACTAGAATACACATTTGTACTGTTCTCTATCTCTTTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00702	75865	77712	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01845	hemL	EC:5.4.3.8	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0033014 tetrapyrrole biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000702s00024646.1	PF00202.16	Aminotran_3	23	326	3.60E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.318
SRR1783600	control	1.328
SRR1783602	moderate drought stress	0.796
SRR1811619	moderate drought stress	0.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.457
DRR006520	Root Summer glycyrrhizin high producing strain	2.387
DRR006521	Root Winter glycyrrhizin high producing strain	0.039
DRR006522	Root Winter glycyrrhizin high producing strain	0.038
DRR006523	Root Summer glycyrrhizin low producing strain	1.695
DRR006524	Root Summer glycyrrhizin low producing strain	1.603
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.233
SRR2868004	Drought Stress (root)	3.949
SRR2967015	Control (root)	5.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.047
SRR9715740	Leaf	0.044
SRR9715741	Leaf	0.279
SRR9715739	Root	0.017
SRR9715742	Root	0.333
SRR9715743	Root	0.107

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.365
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.220
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.114
SRR8749032	Uninduced	0.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.378
SRR8400027	Control - Root	2.157