Gene detail

Gene detail information of Glyur000702s00024639

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76080.1	6.00E-71	chloroplastic drought-induced stress protein of 32 kD
NR	AFK36758.1	1.55E-111	unknown [Lotus japonicus]
Swissprot	tr\|Q9SGS4\|CDSP_ARATH	2.00E-87	Thioredoxin-like protein CDSP32, chloroplastic (Precursor)
trEMBL	tr\|I3S916\|I3S916_LOTJA	6.00E-112	Uncharacterized protein {ECO:0000313\|EMBL:AFK36758.1}

Sequence

Transcript Sequence

>Glyur000702s00024639.1
CGCCACTTGAGTTTTTGACCAAGAAAAAAAAAAGCCACTTAAGTTTGGAGACACTAGTTCGTGGATATTCATACGTGTGAAACCAAAAGATAAAAGAAGAAGCAATTGATTTTTATATGAAAACAAGAGGCCGAGAAAGATTGGGGAAAGATGAGTGATTTTTTTTATGGAAACTGTGATGCAGATTATTTGTGTACCCCATCGTCAGTGGTTTTTTTTCCCTTGAGTATACATACTGGTGCTGTTTATGAGATACTTGTACGTAAATCAAACAAGATTTCATTTCATTGATGCCTATAGAACAGGACGAAAATGAACTGAAAAAACAAGAAAATAAAAACAAAAAAAATCCAAAAAGACACGTGTGGTGAATATGTACCACATGCCAAGCGAGAGGGGGATATGATTTTTTGATTTCATCTTCACTGGCATTCTTCCAAGGCGAGGCGACTTCAAGATTTGTTCCTCCTAAGCTCGCAAACCTCCACACTCTCAGTTCCCTTCCACTCTCTGGCCCATGGCTGCTACAATTACCAACAATTTCAATTTCATATGCAAACCCCTTACCCCTCCTTCGAATAATAAGCCCATTCTTCTTCGCTCTCGTTTACCCATTANTTTCATGACCCAAAAATGCCATTCTCCTCCGCAATTAGCACTGCAGGGAGCCTCTNACCATCAGATGCGTTTCAGTCTTATGACCACTAAAGCCACAGCGGCTTCTGGTGCGAAGAAAGTGGAAAGGGACGAAAGGGTCCAGCGTGTCCACAGCATCGAGGAGTTCGACGAGGCGCTTCAAGCCGCGAAAGACAAACTGGTAGTTGTAGAGTATGCCACGAGCGACAACACAGAGAGCAGCGACATATACCCTTTCCTTGTGGATCTCAGCCGCACCTGCAACGACGTCGAGTTCCTGCTGGTAATGGGTGACGAGTCGGAGAAGACAAAGGAGCTGTGCAAGAGAGAGAAAGTAGAGAAGGTGCCGCACTTCACGTTTTACAAGAGCATGGAGAAGATCCATGAGGAAGATGCCATAGGTCCAGATCAGTTGGTAGGGGACGTGCTATACTACGGTGACAGCCATTCGGAGGTGGTGCAGCTGCATAGCAGGCAGGACGTGGAGTCGTTGATCGAGGACCACAAGGTTGATCACAAGCTGATCGTGCTGGACCTGTCGAGGCAGATGTCTGATTCGGTGGTGTTTGCGAGGATGAACGGTGATGAGAACGATAGCTGCATGGAGTTCTTGAGGGACATGGAGGTTGTGCAGAGACGGACAGATTCGAGGGAGGTACGTGGGTTCCGGGAAAGGAGAGCTCATTGGGGAAATCCTCAGACCCTGGCGCGGTCACCCCTCTTATCAATCCTCAGTAGGGATGGCAATTGGACCCAGACCCGATGGGCACCCGCAAAATTTACTCGCAATGGGGAGGGTAATTACCCGCTTAATGGGTACGGGCATGGGTACCCAGAGGGTAAGGGTACGGGGAGCAAAGTTGCTACCCACGCGGTTATGGGGACGGGTACAGGTATTTTTTCAAACTGCGGGTATGGAGGACGGGCCACCCCAGCTACCTCCTGGCTGTCCTGTCAGGTTGTTCATCGCCCAAGGCTTTTTATATCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00702	43373	47555	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000702s00024639.1	PF00085.15	Thioredoxin	83	169	5.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.097
SRR1783600	control	0.081
SRR1783602	moderate drought stress	0.424
SRR1811619	moderate drought stress	0.424

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.202
DRR006520	Root Summer glycyrrhizin high producing strain	0.226
DRR006521	Root Winter glycyrrhizin high producing strain	0.011
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.324
DRR006524	Root Summer glycyrrhizin low producing strain	0.233
DRR006525	Leaf Summer glycyrrhizin high producing strain	635.136
DRR006526	Leaf Summer glycyrrhizin high producing strain	631.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.050
SRR2868004	Drought Stress (root)	4.317
SRR2967015	Control (root)	1.834

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	392.089
SRR9715740	Leaf	605.872
SRR9715741	Leaf	382.841
SRR9715739	Root	0.269
SRR9715742	Root	0.541
SRR9715743	Root	0.659

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.135
SRR8749028	MeJA induced 9h	0.180
SRR8749029	MeJA induced 9h	0.023
SRR8749030	Uninduced	0.052
SRR8749031	Uninduced	1.362
SRR8749032	Uninduced	0.944

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.398
SRR8400027	Control - Root	1.417