Gene detail information of Glyur000701s00019660 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.2 | 1.00E-87 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_003620113.1 | 0 | Resistance protein PRG [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 3.00E-106 | TMV resistance protein N |
| trEMBL | tr|G7KK77|G7KK77_MEDTR | 0 | Functional resistance protein KR1, putative {ECO:0000313|EMBL:AES76331.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00701 | 113704 | 117678 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000701s00019660.1 | PF01582.15 | TIR | 33 | 131 | 9.80E-24 |
| Glyur000701s00019660.1 | PF00931.17 | NB-ARC | 202 | 384 | 1.30E-28 |
| Glyur000701s00019660.1 | PF13306.1 | LRR_5 | 585 | 684 | 4.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.945 |
| SRR1783600 | control | 1.913 |
| SRR1783602 | moderate drought stress | 1.854 |
| SRR1811619 | moderate drought stress | 2.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.429 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.566 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.710 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.521 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.648 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.883 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.219 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.782 |
| SRR2868004 | Drought Stress (root) | 27.688 |
| SRR2967015 | Control (root) | 26.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.768 |
| SRR9715740 | Leaf | 0.243 |
| SRR9715741 | Leaf | 0.517 |
| SRR9715739 | Root | 0.422 |
| SRR9715742 | Root | 1.690 |
| SRR9715743 | Root | 1.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.780 |
| SRR8749028 | MeJA induced 9h | 5.323 |
| SRR8749029 | MeJA induced 9h | 2.754 |
| SRR8749030 | Uninduced | 2.831 |
| SRR8749031 | Uninduced | 2.930 |
| SRR8749032 | Uninduced | 2.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.213 |
| SRR8400027 | Control - Root | 5.571 |