Gene detail

Gene detail information of Glyur000701s00019659

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	8.00E-130	NB-ARC domain-containing disease resistance protein
NR	XP_004499780.1	0	PREDICTED: disease resistance protein RPM1-like [Cicer arietinum]
COG	NP_485676.1	1.00E-11	regulatory protein [Nostoc sp. PCC 7120]
Swissprot	tr\|Q39214\|RPM1_ARATH	5.00E-149	Disease resistance protein RPM1
trEMBL	tr\|V7BUQ1\|V7BUQ1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20780.1}

Sequence

Transcript Sequence

>Glyur000701s00019659.1
ATGGCAGAAAGTGCAGTATCCTTTGTTTTGGAGCAACTTTACCAACTTGTGACAGAAGAAGGAACTTTGCTGAGAGGGGTCCACAAAGACTTTGCAGACATCAAAGATGAACTTGAGAGCATTCAAGCCTTCCTCAAGGATGCAGATAGAAGGGCTGCTAGTGAAGGAGGAGGAACCAACAACAGTGAAGGGGTCAAAACATGGGTGAAGCAGCTGAGAGAAGTATCCTTTCACATAGAAGATGTGATTGATNAGTACATCATGTATATTGTGGCACCACAAACACAAAGGGNTGCTCACTCCAAAGCCATAGCCTCACTCCAAAAGGTTGCTCACCTCATCAAGACCNTGAAGCCACGTCATCAGATAGCATCTGAGATCCAAGGCCTCAAGTCNTCAGTTCGTGGAATCAGGGAGAGAAGTGAAAGGTATGAGTTTCAGTCTTNTAATTCCCTTGCTGCAGNAGGGAGGAGTAGGAGTACTAAAGATGCCAAATTTGGTGACCCTCGAATGGCTTCNCTCTTCATTGAAGAGAATGAAGTGGTGGGGTTTGAGTCCCCAAGAGATGAGTTGGTTGGTTGCTTGGTGAATGGAACCAATGAGCGCATGTTGGTTTCTGTGGTTGGCATGGGGGGGATTGGAAAAACCACCCTTGCTAAGCATGTTTTTGATAACAAGCAGGTGAAGAAGCACTTTGATTGCCGCTCCTTCATCACTGTTTCTCAATCCTACACTGTGAGGGGGTTGTTGATAGAGATGATACACAAGTTTTGTAAGGACAGCAATGAGCCTATTCCAAAGGGTCTGCACAAGTTGGATGACAACACATTGATTAGTGAAGTGAGGCAATTCCTTGAGTCAAAGAGGTACTTGGTTTTGTTTGATGATGTTTGGAGAGAAGATTTTTGTGATGAGATTGAACATGCCTTGACTAATAATAACAAAGGAAGCAGAATCATAATCACCACTAGAAACATGCCTGTGGCAGAATATTGTAACAAGTCTTTTCCTGTTCATGTTCATAGCCTCAAACCATTGTCTCCAGACAAGGCATGGGAACTATTCTGCAAGAAGGCATTTAGATCTGAGCCTGGAGGGCAGTGTCCAACTGAGCTTGAGGATATGTCCAATGATTTTGTTCAAAAGTGTGGAGGGCTACCACTGGCAATCGTGGCCATTGGTGGTCTTTTGTCAACAAAAGCTAAGACCATGTTTGAATGGAGGAAGGTGAGTCAAAATCTGAGGATGGAGTTAAAGCGGAATGCGCATTTAACTAGCTTAACAAGGATTCTGTCTCTTAGTTATGATGATCTGCCTCACAATTTGAAATCATGCATGCTATATTTTGGTATATACCCTGAGGACTACACCATCAAACACACAAGACTCACTAGGCAATGGATGGCTGAAGGGTTTGTTCGATACGAGGAGAGAAGAACTATGGAGGAAGTTGCTGAAGAGTACTTGATGGAGTTGATACATAGAAGTTTGNTTCAGGTTTCCAGACTTGGCATTGATGGGAAAGTCAAACGTTGTCAGGTCCATGATTTGTTGCGGGAAGTGATCGTTGAAAAAATGAAAGATTTAAGCTTTTGCCATCTAATGCATGAAGATGATGAAGAAGTCACAGTTGGAATAACTAGGCGCTTTTCTATAGCAGCTGGCTCCAACAATGCATTGAGAAGCACTAGTAACAAAGGCATTCGTGCTGTTATTGTTTTTGACAAAGGGGAATTGCCTGAACACTTCTTGAGTAGATTATCTACCAAGTTCAAGCTTTTGAAAGTACTTGATTTTGAAAACTCTTTGTTGAATCATGTTCCTAATAATTTGGGGAACCTTTTTCACCTAAGGTACTTAAACCTGAGTCATACAAAAGTGGAGGTTCTTCCTAGATCCATTGGTATGGTAGTGAACTTAGAAACCTTGGATCTAAGGCAAACACTCGTGCATGAGTTACCAAGGGAGATAAACAAGCTCACAAAGCTAAGGCTTCTTCTTGTTCATTATAGAAAGTATGAACGCCACTATTCTGCTACAGGCTTTACAACAGGAGTGAAAATGCAAAAGGGTATTGGATGCTTGAAATCTTTACAAAAGCTTTACTATTTGGAAGCAGATCATGGTGGAATAGACCTTATCCAAGAGCTCAAAATGTTACGACAGTTAAAGAAGTTAGGAATAAGGGGTGTGCGGACGGAATATGGGAATGCCTTGTGTGCTGCAATACAAGAGATGAAGCACTTTGAGTCTCTAAACATTAGTGTTATAGCTCAGGATGAAGTCCTTGACATGGATTTTGCATCTGCTCCACCCCATCTAAGAGTGCTCAAATTGAATGCTAGACTAACCAAGTTGCCTGATTGGATTCCAAAACTTGAGTATGTTGTGAAGCTAAGGTTTGCCTTATCTAAATTGGAAGATGATCCACTAGAGTCTTTGAAGAAATTGCCAAACTTGTTGAGGCTCAATATATGGGATGATGCCTATGTTGGTGAAAGTTTGAATTTTCAAGTAGGTGGGTTTCTAAAGCTGAAGGAACTGGATCTCAGTAGATTGAATAGACTAAATTCTATCTCTATAGATGAAGGGGCTCTACTTGGTCTTGAAAACTTCAGGATCAACGATAACCCACAGTTGAAGGTGGTACCCCAAGACCTCAAACACTTGGTAAACCTTCAATTCCTTGGATTTGCTGACATGCCAGCTGAATTAGTNGAAAGCATTGATCCAGACAAAGGTGGACAATTCCATTGGATCATCAAGCACATTCCCCGTGTACTCATTCGTCAGAAAGTGGGACCAAGATTTCAAGACTATGAGATGCGCCCCATTCCTACTCGATCTATCCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00701	98956	101811	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000701s00019659.1	PF00931.17	NB-ARC	188	476	1.10E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.587
SRR1783600	control	5.654
SRR1783602	moderate drought stress	10.417
SRR1811619	moderate drought stress	10.364

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.828
DRR006520	Root Summer glycyrrhizin high producing strain	4.486
DRR006521	Root Winter glycyrrhizin high producing strain	2.629
DRR006522	Root Winter glycyrrhizin high producing strain	2.482
DRR006523	Root Summer glycyrrhizin low producing strain	5.439
DRR006524	Root Summer glycyrrhizin low producing strain	5.374
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.417
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.479

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.009
SRR2868004	Drought Stress (root)	38.439
SRR2967015	Control (root)	32.642

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.732
SRR9715740	Leaf	0.699
SRR9715741	Leaf	0.897
SRR9715739	Root	0.882
SRR9715742	Root	8.601
SRR9715743	Root	7.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.597
SRR8749028	MeJA induced 9h	0.683
SRR8749029	MeJA induced 9h	0.906
SRR8749030	Uninduced	1.625
SRR8749031	Uninduced	1.702
SRR8749032	Uninduced	0.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.374
SRR8400027	Control - Root	14.946