Gene detail

Gene detail information of Glyur000701s00019656

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22470.1	1.00E-30	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004512752.1	8.93E-66	PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q6NQ83\|PP247_ARATH	4.00E-33	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial (Precursor)
trEMBL	tr\|V7C3E9\|V7C3E9_PHAVU	1.00E-65	Uncharacterized protein {ECO:0000313\|EMBL:ESW24672.1}

Sequence

Transcript Sequence

>Glyur000701s00019656.1
ATGGTGAAGAAGGTTCACGGACATGAGCTTTCTGTCAACGGCTTTTGCGCGGTGGTTTCGGGGTTTCGATGGATTAGCGGTGGCATGGTGCGGTGGAAGAAAGGTCCGATTCACATTGATTTCGTGACGACCTCGAAGTGTCGTCTCCGGCGGGGTGGACGACGACGATGGAGGGGTGAAGTCGTGAAGAAGACGGGCAGAGCCGCCGTTACTAGCCGCCCACCACCGCTGGTCGCCGGTCAACCGCTCGCCACCGCCGGTCTGTTCATTCCCAATTTCTCAGCATCGAAGAAAGACAACCTTCTTCAACTTTGGAAAGAAGGTTGTGATGTTGTGTACTGCTACAACGACAAGGTTAAGATGGGTTTTGCTTTTTCCATATTGGGCATGGTTTTCAAGAGGGGTTATCAACCCAATACCATAATCTTCACGACACTCGTAAAAGGGCTTTGCATCAATGGTGATGTTAGGAAAGCAATGGACTTTCAAGACAATGTGATGGCACAAGGATTTATGTTGGATGAAGGAATGTTCACAGAAGCTCAACGTATGTGTAATTCGATGATTGAAAGAGGTCAGCGACCAGACATTGTTAGTTTCAACACATTAATGAGTGGATATTGCTTGCACGATAATGTGGATGAGGCAAGAAAGTTATTTGACACAGTTATTGAATGGGGTATTCTGCCTGATATCTGGAGTTATAACATATTGATTATTGGGTATTGCAAGAGTAAAAGGATCGATGAAGCTTTGAGTCTCTTCAATGAAATGCATTGCAAAAATTTGGTTCCTAATATTGTAACTTACAGTTCTCTTATTGATGGATTGTGCAAATCTGGCAAAATCTCTTTTGCATGGAAGCTTTTTATTACAATCAATGATGGTGGTCCACCCCCAAATGTTGAATCAGCATCGAAGGAGATAAGAAGAGGGAGCGTGGCCGACTCAAAGATGAACGAAAATGGAACTTGTTCGAACCTTGATTTTATACCGAAATTATCACCACCAAGAAGTTGTGCTCTGAAATCTACAACTTCGTGGACTCCATTACCACCACCTCCACCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00701	86089	93316	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000701s00019656.1	PF12854.2	PPR_1	134	162	2.70E-07
Glyur000701s00019656.1	PF12854.2	PPR_1	191	221	3.80E-10
Glyur000701s00019656.1	PF13041.1	PPR_2	230	279	1.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.566
SRR1783600	control	2.688
SRR1783602	moderate drought stress	2.363
SRR1811619	moderate drought stress	2.491

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.723
DRR006520	Root Summer glycyrrhizin high producing strain	1.812
DRR006521	Root Winter glycyrrhizin high producing strain	2.154
DRR006522	Root Winter glycyrrhizin high producing strain	1.517
DRR006523	Root Summer glycyrrhizin low producing strain	1.000
DRR006524	Root Summer glycyrrhizin low producing strain	1.204
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.319
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.829
SRR2868004	Drought Stress (root)	1.533
SRR2967015	Control (root)	1.471

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.616
SRR9715740	Leaf	2.190
SRR9715741	Leaf	1.742
SRR9715739	Root	0.320
SRR9715742	Root	1.545
SRR9715743	Root	1.066

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.516
SRR8749028	MeJA induced 9h	9.056
SRR8749029	MeJA induced 9h	2.609
SRR8749030	Uninduced	3.635
SRR8749031	Uninduced	3.356
SRR8749032	Uninduced	2.629

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.107
SRR8400027	Control - Root	2.302