Gene detail information of Glyur000701s00019653 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41980.1 | 1.00E-101 | |
| NR | KHN43636.1 | 4.33E-164 | Putative nuclease HARBI1 [Glycine soja] |
| trEMBL | tr|M5WAT6|M5WAT6_PRUPE | 8.00E-163 | Uncharacterized protein {ECO:0000313|EMBL:EMJ10426.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00701 | 77419 | 79799 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000701s00019653.1 | PF13359.1 | DDE_Tnp_4 | 169 | 258 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.251 |
| SRR1783600 | control | 8.378 |
| SRR1783602 | moderate drought stress | 6.880 |
| SRR1811619 | moderate drought stress | 6.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.745 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.680 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.223 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.994 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.394 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.688 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.287 |
| SRR2868004 | Drought Stress (root) | 15.137 |
| SRR2967015 | Control (root) | 13.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.991 |
| SRR9715740 | Leaf | 4.948 |
| SRR9715741 | Leaf | 3.259 |
| SRR9715739 | Root | 7.411 |
| SRR9715742 | Root | 7.688 |
| SRR9715743 | Root | 7.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.515 |
| SRR8749028 | MeJA induced 9h | 13.772 |
| SRR8749029 | MeJA induced 9h | 7.826 |
| SRR8749030 | Uninduced | 4.270 |
| SRR8749031 | Uninduced | 2.104 |
| SRR8749032 | Uninduced | 1.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.336 |
| SRR8400027 | Control - Root | 15.318 |