Gene detail

Gene detail information of Glyur000701s00019649.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17940.1	1.00E-138	Galactose mutarotase-like superfamily protein
NR	AFK40570.1	0	unknown [Lotus japonicus]
COG	YP_008148073.1	7.00E-101	aldose 1-epimerase [Sorangium cellulosum So0157-2]
trEMBL	tr\|I3SJX8\|I3SJX8_LOTJA	0	Aldose 1-epimerase {ECO:0000256\|PIRNR:PIRNR005096}

Sequence

Transcript Sequence

>Glyur000701s00019649.1
GAAAAAAAAAACTTAAATTTACTTGAGAAGAATAAGAACTGTTGAGAGTNTATTGGCGTTTTAATTTGACAACGAATGGTGACAGAGACAGCATTTATATCCATGAATTGGAGTGAGTGATCACTGAGTCAGTGAGGGATTTGGATTCAATCGCATTCCTTTGTCACAATTTTCACACATACCCCTCTTTCTCTCTCTCTCTCTCTCTCTCTTCAATGGCGGATCAGAGCCAGAAAGCAGAGATCTTTGAGCTCAACAATGGCACAATGCAAGTCCTCCTCACCAATCTCGGTTGCACTATCACCTCCCTCTCTGTACCCAACAAAGATGGTGTGTTGTCCGATGTTGTTCTTGGCCTTGACTCTGTTGAATCCTATCAGAAAGGTCTTGCTCCTTATTTTGGCTGCATTGTGGGACGGGTTGCAAACCGAATTAAGGATGGCAAGTTTACACTTGATGGGGTTGAGTACTCTTTGCCTATCAACAAACCCCCAAACAGTCTCCACGGTGGAAATGTTGGGTTTGATAAGAAGGTATGGGAGGTACTTGAATATAGAAAAGGCGAAATCCCATCAATCACTTTTAAGCATNACAGTCATGATGGGGAGGAAGGTTATCCTGGGGATATCACTGTTACTGCAACTTACACACTCACCTCAAGCACCACTCTGAGGCTTGACATGCAAGGAGTACCAAAGGACAAGCCGACCATAATGAACTTAGCTCAGCATACCTACTGGAACTTAGCTGGCCATAACTCTGGGAACATACTCGACCATTCGATTCAGATATGGGCGAATCACGTCACTCCCGTGGATCAGAATACCGTGCCAACCGGTGAAATCATGCCAGTGAAGGGTACCCCTTTCGATTTCACATCCGAGAAGAGAATAGGCGACACCATTGATCAGGTCGGAATGGGATATGACCACAATTACGTGCTCGATTGCGGGGAAGAGAAAGCCGGTTTGAGGCGTGCTGCGAAAGTGAGGGACCCTTNGAGTTCAAGGGTACTTAACTTGTGGACAAATGTCCCTGGCATGCAATTTTACACNGCAAACTATGTCAACAATGTGGCTGGAAAAGGAGGTGCTGTATATGGAAAGCATGCTGGGTTGTGTTTGGAGACACAGGGATTCCCNAATGCCATAAACCAGCCAAATTTCCCATCTGTTGTGGTTCGACCTGGTGAGAAGTATCAACATTCCATGTTGTTTGAGTTTTCAGTTGAATAAAGTAATATNTTGTTGAAGTGGACACTGAAATAAGGGAGATCTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00701	41656	44227	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01785	galM, GALM	EC:5.1.3.3	Glycolysis / Gluconeogenesis	map00010
			Galactose metabolism	map00052

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0019318 hexose metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016853 isomerase activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000701s00019649.1	PF01263.15	Aldose_epim	11	334	5.90E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	93.346
SRR1783600	control	93.325
SRR1783602	moderate drought stress	88.702
SRR1811619	moderate drought stress	88.132

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.830
DRR006520	Root Summer glycyrrhizin high producing strain	59.876
DRR006521	Root Winter glycyrrhizin high producing strain	15.309
DRR006522	Root Winter glycyrrhizin high producing strain	15.219
DRR006523	Root Summer glycyrrhizin low producing strain	90.250
DRR006524	Root Summer glycyrrhizin low producing strain	89.135
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.377
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.860

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.222
SRR2868004	Drought Stress (root)	47.174
SRR2967015	Control (root)	43.055

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.025
SRR9715740	Leaf	16.445
SRR9715741	Leaf	20.985
SRR9715739	Root	50.853
SRR9715742	Root	47.112
SRR9715743	Root	49.568

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.894
SRR8749028	MeJA induced 9h	42.412
SRR8749029	MeJA induced 9h	47.985
SRR8749030	Uninduced	22.333
SRR8749031	Uninduced	11.506
SRR8749032	Uninduced	23.310

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.681
SRR8400027	Control - Root	62.697