Gene detail information of Glyur000701s00019648 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48550.1 | 2.00E-126 | Vacuolar protein sorting-associated protein 26 |
| NR | XP_004512746.1 | 0 | PREDICTED: Down syndrome critical region protein 3 homolog isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7KPT8|G7KPT8_MEDTR | 0 | Down syndrome critical region protein, putative {ECO:0000313|EMBL:AES76055.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00701 | 35407 | 40918 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000701s00019648.1 | PF03643.10 | Vps26 | 9 | 271 | 8.70E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.740 |
| SRR1783600 | control | 9.604 |
| SRR1783602 | moderate drought stress | 7.843 |
| SRR1811619 | moderate drought stress | 7.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.919 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.504 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.887 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.358 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.463 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.560 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.559 |
| SRR2868004 | Drought Stress (root) | 21.970 |
| SRR2967015 | Control (root) | 20.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.544 |
| SRR9715740 | Leaf | 15.884 |
| SRR9715741 | Leaf | 17.774 |
| SRR9715739 | Root | 0.894 |
| SRR9715742 | Root | 4.314 |
| SRR9715743 | Root | 5.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.621 |
| SRR8749028 | MeJA induced 9h | 6.666 |
| SRR8749029 | MeJA induced 9h | 5.148 |
| SRR8749030 | Uninduced | 8.436 |
| SRR8749031 | Uninduced | 3.887 |
| SRR8749032 | Uninduced | 4.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.146 |
| SRR8400027 | Control - Root | 17.719 |