Gene detail information of Glyur000699s00025415 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58005.2 | 4.00E-45 | Cytochrome c oxidase, subunit Vib family protein |
| NR | XP_006575308.1 | 1.20E-64 | PREDICTED: uncharacterized protein LOC100780570 isoform X2 [Glycine max] |
| trEMBL | tr|I1JGN2|I1JGN2_SOYBN | 4.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G36390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00699 | 73454 | 74173 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000699s00025415.1 | PF02297.12 | COX6B | 20 | 92 | 1.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.197 |
| SRR1783600 | control | 19.282 |
| SRR1783602 | moderate drought stress | 14.575 |
| SRR1811619 | moderate drought stress | 14.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.816 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.409 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.681 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.710 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.631 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.746 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.160 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.276 |
| SRR2868004 | Drought Stress (root) | 27.784 |
| SRR2967015 | Control (root) | 25.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.266 |
| SRR9715740 | Leaf | 25.340 |
| SRR9715741 | Leaf | 25.431 |
| SRR9715739 | Root | 11.895 |
| SRR9715742 | Root | 11.541 |
| SRR9715743 | Root | 9.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.390 |
| SRR8749028 | MeJA induced 9h | 59.982 |
| SRR8749029 | MeJA induced 9h | 65.104 |
| SRR8749030 | Uninduced | 37.395 |
| SRR8749031 | Uninduced | 19.667 |
| SRR8749032 | Uninduced | 38.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.199 |
| SRR8400027 | Control - Root | 40.821 |