Gene detail information of Glyur000699s00025412 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58000.1 | 5.00E-90 | Reticulon family protein |
| NR | XP_003518216.1 | 0 | PREDICTED: reticulon-like protein B21-like [Glycine max] |
| Swissprot | tr|Q56X72|RTNLS_ARATH | 2.00E-107 | Reticulon-like protein B21 |
| trEMBL | tr|K7K9Q7|K7K9Q7_SOYBN | 0 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00699 | 37321 | 42625 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000699s00025412.1 | PF02453.12 | Reticulon | 366 | 520 | 2.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.900 |
| SRR1783600 | control | 12.909 |
| SRR1783602 | moderate drought stress | 5.619 |
| SRR1811619 | moderate drought stress | 5.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.321 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.450 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.863 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.670 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.883 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.998 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.681 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.737 |
| SRR2868004 | Drought Stress (root) | 12.205 |
| SRR2967015 | Control (root) | 12.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.502 |
| SRR9715740 | Leaf | 1.299 |
| SRR9715741 | Leaf | 0.935 |
| SRR9715739 | Root | 0.446 |
| SRR9715742 | Root | 6.377 |
| SRR9715743 | Root | 4.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.051 |
| SRR8749028 | MeJA induced 9h | 7.687 |
| SRR8749029 | MeJA induced 9h | 2.560 |
| SRR8749030 | Uninduced | 4.575 |
| SRR8749031 | Uninduced | 2.363 |
| SRR8749032 | Uninduced | 2.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.352 |
| SRR8400027 | Control - Root | 35.973 |