Gene detail information of Glyur000699s00025411 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58160.1 | 2.00E-173 | actin binding |
| NR | XP_006575310.1 | 0 | PREDICTED: formin-like protein 13-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LVN1|FH13_ARATH | 0 | Formin-like protein 13 |
| trEMBL | tr|K7K9Q8|K7K9Q8_SOYBN | 0 | Formin-like protein {ECO:0000256|RuleBase:RU361260} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00699 | 22261 | 33089 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000699s00025411.1 | PF10409.4 | PTEN_C2 | 198 | 334 | 2.80E-26 |
| Glyur000699s00025411.1 | PF02181.18 | FH2 | 804 | 1167 | 1.70E-103 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.817 |
| SRR1783600 | control | 2.814 |
| SRR1783602 | moderate drought stress | 4.136 |
| SRR1811619 | moderate drought stress | 4.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.873 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.844 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.149 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.112 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.063 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.927 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.385 |
| SRR2868004 | Drought Stress (root) | 7.511 |
| SRR2967015 | Control (root) | 9.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.926 |
| SRR9715740 | Leaf | 5.074 |
| SRR9715741 | Leaf | 5.969 |
| SRR9715739 | Root | 0.681 |
| SRR9715742 | Root | 3.251 |
| SRR9715743 | Root | 2.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.298 |
| SRR8749028 | MeJA induced 9h | 4.947 |
| SRR8749029 | MeJA induced 9h | 1.863 |
| SRR8749030 | Uninduced | 3.063 |
| SRR8749031 | Uninduced | 2.220 |
| SRR8749032 | Uninduced | 1.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.987 |
| SRR8400027 | Control - Root | 7.654 |