Gene detail information of Glyur000698s00016589 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08710.1 | 2.00E-140 | Regulator of chromosome condensation (RCC1) family protein |
| NR | AES72948.2 | 0 | chromosome condensation regulator RCC1 repeat protein [Medicago truncatula] |
| COG | YP_002462041.1 | 4.00E-32 | chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 2.00E-41 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|G7J2N3|G7J2N3_MEDTR | 0 | Chromosome condensation regulator RCC1 repeat protein {ECO:0000313|EMBL:AES72948.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00698 | 100731 | 106678 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000698s00016589.1 | PF00415.13 | RCC1 | 44 | 87 | 1.00E-09 |
| Glyur000698s00016589.1 | PF00415.13 | RCC1 | 128 | 177 | 1.70E-08 |
| Glyur000698s00016589.1 | PF00415.13 | RCC1 | 180 | 231 | 1.50E-11 |
| Glyur000698s00016589.1 | PF00415.13 | RCC1 | 235 | 285 | 3.20E-06 |
| Glyur000698s00016589.1 | PF00415.13 | RCC1 | 345 | 395 | 1.40E-13 |
| Glyur000698s00016589.1 | PF00415.13 | RCC1 | 406 | 448 | 1.40E-05 |
| Glyur000698s00016589.2 | PF00415.13 | RCC1 | 44 | 87 | 9.30E-10 |
| Glyur000698s00016589.2 | PF00415.13 | RCC1 | 90 | 139 | 1.50E-08 |
| Glyur000698s00016589.2 | PF00415.13 | RCC1 | 142 | 193 | 1.40E-11 |
| Glyur000698s00016589.2 | PF00415.13 | RCC1 | 197 | 247 | 2.80E-06 |
| Glyur000698s00016589.2 | PF00415.13 | RCC1 | 307 | 357 | 1.20E-13 |
| Glyur000698s00016589.2 | PF00415.13 | RCC1 | 368 | 410 | 1.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.042 |
| SRR1783600 | control | 5.028 |
| SRR1783602 | moderate drought stress | 6.217 |
| SRR1811619 | moderate drought stress | 6.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.361 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.710 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.748 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.471 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.003 |
| SRR2868004 | Drought Stress (root) | 21.895 |
| SRR2967015 | Control (root) | 18.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.080 |
| SRR9715740 | Leaf | 20.122 |
| SRR9715741 | Leaf | 20.151 |
| SRR9715739 | Root | 2.396 |
| SRR9715742 | Root | 5.939 |
| SRR9715743 | Root | 4.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.255 |
| SRR8749028 | MeJA induced 9h | 14.799 |
| SRR8749029 | MeJA induced 9h | 7.523 |
| SRR8749030 | Uninduced | 19.751 |
| SRR8749031 | Uninduced | 9.844 |
| SRR8749032 | Uninduced | 10.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.614 |
| SRR8400027 | Control - Root | 15.971 |