Gene detail information of Glyur000698s00016587 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08720.1 | 0 | |
| NR | XP_003528072.1 | 0 | PREDICTED: uncharacterized protein LOC100777483 [Glycine max] |
| COG | YP_001514797.1 | 7.00E-22 | cyclase/dehydrase [Acaryochloris marina MBIC11017] |
| trEMBL | tr|I1KBQ6|I1KBQ6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G16600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00698 | 83703 | 88426 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000698s00016587.1 | PF03364.15 | Polyketide_cyc | 98 | 248 | 9.80E-18 |
| Glyur000698s00016587.1 | PF03364.15 | Polyketide_cyc | 378 | 459 | 9.70E-11 |
| Glyur000698s00016587.2 | PF03364.15 | Polyketide_cyc | 98 | 222 | 7.40E-17 |
| Glyur000698s00016587.2 | PF03364.15 | Polyketide_cyc | 352 | 433 | 9.20E-11 |
| Glyur000698s00016587.3 | PF03364.15 | Polyketide_cyc | 315 | 396 | 8.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.012 |
| SRR1783600 | control | 1.996 |
| SRR1783602 | moderate drought stress | 2.192 |
| SRR1811619 | moderate drought stress | 2.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.202 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.115 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.306 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.203 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.968 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.044 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.211 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.806 |
| SRR2868004 | Drought Stress (root) | 10.551 |
| SRR2967015 | Control (root) | 7.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.720 |
| SRR9715740 | Leaf | 91.377 |
| SRR9715741 | Leaf | 48.209 |
| SRR9715739 | Root | 0.220 |
| SRR9715742 | Root | 1.324 |
| SRR9715743 | Root | 1.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.510 |
| SRR8749028 | MeJA induced 9h | 3.044 |
| SRR8749029 | MeJA induced 9h | 0.832 |
| SRR8749030 | Uninduced | 0.353 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.206 |
| SRR8400027 | Control - Root | 9.134 |