Gene detail

Gene detail information of Glyur000698s00016577

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52950.2	0	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
NR	XP_003602693.1	0	Octicosapeptide/Phox/Bem1p domain-containing protein [Medicago truncatula]
COG	YP_005026281.1	4.00E-16	putative signal-transduction protein containing cAMP-binding and CBS domains [Dechlorosoma suillum PS]
Swissprot	tr\|Q9LF97\|Y3295_ARATH	0	CBS domain-containing protein CBSCBSPB3
trEMBL	tr\|G7J2M9\|G7J2M9_MEDTR	0	CBS/octicosapeptide/phox/Bemp1 (PB1) domain protein {ECO:0000313\|EMBL:AES72944.1}

Sequence

Transcript Sequence

>Glyur000698s00016577.1
CAAACTACCCGTGAGTCGTGATTTGACACGATGAAACAGAACACGAGACAGAGATATCTGGGGTCGGAATAGAATAGGATAATGCCGATATGGTGTATACAATAGTCAGCATTATAGCTTCATAAATTATTTTGGCACATTCAATTCAAAACCAGAGATTAAGCGCTAAAGAGATTACTCTTACGAAAATGAAGAAGACCAAACGCCACCATTCCAAGAAGCCTCTCTCCTCCGAAAACGGAAGCGCCAAACCAACCTCCCCTTCTTCCCAACCGCATCCGGATGATGGAGGAGAAAGGACGGTGAAGAAGCTTCGGTTATCGAAGGCGCTCACCATCCCCGATGGGACGACGGTTTCCGATGCATGTAGACGAATGGCTGCTCGTCGTGTGGATTCTGTTCTGTTAACTGATTCCAGTGCTCTGCTTTCNGGAATTCTCACTGACAAGGATGTTGCTACTAGAGTTGTCGCCGAGGGGTTGCGGCCGGAGGAGACGACGGTGTCGAAAGTAATGACACGGAATCCTATCTTTGTCTCATCAGATACACTGGCCATTGAAGCTCTTCAGAAGATGGTCCAGGGTAAATTCAGACACCTCCCGGTTGTGGAAAATGGCGAAGTCATTGCCATGCTGGATATCACCAGATGTCTCTATGATGCCATATCAAGGGTGGAGAAGGCTGCTCAGCNAGGGAGTGCCACTGCTGCTGCAGTCGAGGGGGTGGAACACCAGCGGGGTGGTAATATAGCTCCAAATGCTTTCATTGAAACTTTGAGGGAGCGCATATTCAAGCCTTCCCTGTCAACTATACTTGGTGAAAATACAAAGTTTGCTATTACATCACCATCAGATCCTGTCTATGTAGCTGCGAAACAGATGCGTGAGTTTCATGTAAATTCAGCTGTGATTGTGATGGAAACCAAGATTCTGGGGATACTGACTTCAAAAGACATTCTTATGCGTGTTGTGGCTCAAAATCTTTCCCCAGAGTCGACCTTAGTGGAAAAGGTAATGACTCCAAACCCAAAATGTGCATCNCTAGAGACAACATTTCTTGATGCGCTGCATATGATGCATGATGGGAAGTTTTTACATCTTCCTGTGGTGGACAGAGATGGAAATGTTGCTGCTTGTGTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTACGGTTGAAAGTGGCTCTGGAAATGTTAATGAAAACACAATTATGGAAAAATTTTGGGACTCGGCTTTTGCTCTTGAGCCGCCTGAAGATTATGACACTCATAGTGAAGTCTCTGGAGTTGGACTACTGAGTTTGGATGGGGCAGATACCACAAAGTCCACATATCAGTCTGCAGGTTTTGGAAATTCATTTACTTTTAAAATTGAGGATCTCAATGGTCAAGTGCATCGATTCAGCTGTGGTTCTGAACATCAAGATGAGCTTGTATCTAATGTCATGCAAAGAATTGGTCCTGTTAATGATGGAGAACGCCCTACACTGCTGTATCAAGACGATGAAGGTGATAAAATTATTATTGCAACTGATAACGATCTTGCTGCTGCTGTCAGCTATGCNAGATCTGCAGGACTGAAGGCGCTAAAGTTGGATTTGAACTTTGCTGATTCAACCAAACCGATAAAACCACACACTGACACTGATACAGCCATTGAACAGAAAACCAGTATGTTGTCTCTCCGCTATGGTATTTTTGCAGGTGCTGTTGTTCTNACAAGCATTGGCGTATTGGTCTACTTAAAGCGCTCCAAATAGTGATATGTTTGCCACTTTGAAAACAAAACATGCAATTATCATACTCTAAAAATTATGGAGCTCTATCATGAATCAAATACTTGCTGCACACTGAATAGGTGAATGATGGGAAATCGCCATTTTGTTTTTCAGTCTCTGATGTGTAATTGTACCCAGTATCCTTTTTTGTACGAGTATATGTTGAGATAAAGTCGNGGCATGCAAAAAATCAAATGTCACGACTCACGATATTCTTTTCTGTTACTTCAAGGGTGTTGCAATTTCCGAAATATATCAACTTCCCTAATGGAATAGTTGAAACTTTTGCGGTCAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00698	51284	57390	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000698s00016577.1	PF00571.23	CBS	46	93	4.30E-06
Glyur000698s00016577.1	PF00571.23	CBS	105	150	2.80E-08
Glyur000698s00016577.1	PF00571.23	CBS	218	260	5.10E-06
Glyur000698s00016577.1	PF00571.23	CBS	272	314	5.40E-06
Glyur000698s00016577.1	PF00564.19	PB1	392	472	4.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.558
SRR1783600	control	0.547
SRR1783602	moderate drought stress	0.950
SRR1811619	moderate drought stress	0.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.519
DRR006520	Root Summer glycyrrhizin high producing strain	0.517
DRR006521	Root Winter glycyrrhizin high producing strain	0.106
DRR006522	Root Winter glycyrrhizin high producing strain	0.104
DRR006523	Root Summer glycyrrhizin low producing strain	1.168
DRR006524	Root Summer glycyrrhizin low producing strain	1.005
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.083
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.584

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.496
SRR2868004	Drought Stress (root)	1.849
SRR2967015	Control (root)	2.250

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	86.504
SRR9715740	Leaf	141.624
SRR9715741	Leaf	81.859
SRR9715739	Root	0.548
SRR9715742	Root	0.208
SRR9715743	Root	0.450

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.137
SRR8749028	MeJA induced 9h	0.065
SRR8749029	MeJA induced 9h	0.117
SRR8749030	Uninduced	0.107
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.906
SRR8400027	Control - Root	2.153