Gene detail

Gene detail information of Glyur000698s00016573.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63610.1	0	cyclin-dependent kinase E;1
NR	XP_003523203.1	0	PREDICTED: cyclin-dependent kinase E-1-like isoform X1 [Glycine max]
COG	YP_005583841.1	4.00E-18	putative serine/threonine-protein kinase [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]
Swissprot	tr\|Q336M2\|CDKE1_ORYSJ	0	Cyclin-dependent kinase E-1
trEMBL	tr\|K7KLD7\|K7KLD7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G38515.1}

Sequence

Transcript Sequence

>Glyur000698s00016573.1
ATGGGGAAGACTAGGCGGAGATTGCAAGAGGAGGAACTAGGTAGCAGTTCAATGCGTTTACCTGAAAAGATGTTGAGTACTAAAGTCATAATAAAGAACAAAGACAAAAAGGTACTCCACTTTGCTTGCGCCGGAGCAGTTGGTAATCCGAATGCTACATCCAAACAGAGCCTTAAGTCTCCGCCTTGTGGTTGGGTCGAAATCGTGATCGTGATTCGAAACGCAGCCATGGGAGACGGCAGCGGCAGCAACCGGTCCAACAGCAACAGCGGAAGCAACAAGCCAGAGTGGCTGCAGCAGTACGATCTCATAGGGAAGATCGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCAGATCAAGTCTCCCGCAAATCGCGGAAAATCTATCGCCATCAAGAAATTCAAGCAATCCAAGGACGGCGACGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTGAGGGAGATAACACACGAGAATGTTGTTAAGCTTGTGAATGTTCACATCAATCATGCGGACATGTCTCTGTATCTGGCTTTTGATTATGCTCAACATGACCTTTATGAAATAATAAGACATCATAGAGACAAGGTCAACCAAGCCATTAACCAGTACACTGTNAAATCGTTACTATGGCAGTTGCTCAATGGACTGAACTATCTGCACAGTAATTGGATAATACACCGAGATTTGAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTCTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACACTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCTACACTAGAAAAGTGGCCTTCATTAGCAAATCTTCCCCATTGGCAACAAGATTCGCAACATATACAAGGACACAAATATGACAATGCTAGTCTCTATGGTGTTGTGCATCTGTCTCCAAAAAGTCCTGCATATGACCTGTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTCTGGAGCATGAGTATTTCAAAATGGAACCACAACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGACATTTGTGAATTATCCCATACGTCCAGTGGACACAACAACAGATTTTGAAGGGACAACCAACATGCAACCTTCACAACCGGTTTCGTCTGGAGCTGCTGTTTCTGGCAACATAACTGGTGGTCATGTATCAAATAGATCTGTCGCTCGGCCAATGAATGTTGTCGGCATGCAAAGAATGCATCATCAGGCAATGCAAGCTTATAATCTCACATCCCAGGCAGGGATGGGTGCTGGAATGAATCCTGGTGGCATGCCAATGCAACGAGGTGTTCCACAGGCCCATCAACAACAACAGATGAGAAGAAAAGACCAAATGGGGATGCCAGGATACCCTCCACAGCAGAAATCAAGACCACCAACTGCTAATAACATAGGTGATAGGACTCCGTATAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00698	26299	38391	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000698s00016573.1	PF00069.20	Pkinase	102	411	2.20E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.291
SRR1783600	control	27.406
SRR1783602	moderate drought stress	43.955
SRR1811619	moderate drought stress	44.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.330
DRR006520	Root Summer glycyrrhizin high producing strain	45.045
DRR006521	Root Winter glycyrrhizin high producing strain	65.942
DRR006522	Root Winter glycyrrhizin high producing strain	64.161
DRR006523	Root Summer glycyrrhizin low producing strain	49.730
DRR006524	Root Summer glycyrrhizin low producing strain	49.631
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.573
SRR2868004	Drought Stress (root)	44.992
SRR2967015	Control (root)	50.736

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.546
SRR9715740	Leaf	27.526
SRR9715741	Leaf	35.736
SRR9715739	Root	8.077
SRR9715742	Root	21.644
SRR9715743	Root	20.156

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.134
SRR8749028	MeJA induced 9h	60.184
SRR8749029	MeJA induced 9h	42.231
SRR8749030	Uninduced	63.236
SRR8749031	Uninduced	62.113
SRR8749032	Uninduced	58.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.160
SRR8400027	Control - Root	34.299