Gene detail

Gene detail information of Glyur000697s00030027

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21220.1	8.00E-96	Trimeric LpxA-like enzymes superfamily protein
NR	XP_007157181.1	3.23E-154	hypothetical protein PHAVU_002G049200g [Phaseolus vulgaris]
COG	YP_005081930.1	7.00E-54	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|F4JIP6\|LPXD2_ARATH	3.00E-118	Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial (Precursor)
trEMBL	tr\|V7CIT1\|V7CIT1_PHAVU	1.00E-154	Uncharacterized protein {ECO:0000313\|EMBL:ESW29175.1}

Sequence

Transcript Sequence

>Glyur000697s00030027.1
GCCCCGATCCAACCAGTTACGGACCCTCCATTTACTTCTCGTCTTCCGCCCAAAGTGACTGGTGCCGATGACTATGGCTGGAAGGAGGGTACTTGCNTTTGCTTGTTCCACCTCAACCCCTTTTCTCCATTCCAATCAAAACACAAACTTTCTCTATATCCTCGCTCCTCCGCGTCATATCTCCCCATTTTCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCCGATCAGAGGATGATAATTTTCACAAATGGCACAATGGGGGTGGCACTTTCCATGACTCAGCTTCCATTGACTCCACAGCCTTCGTAGAGGTTGGCGCTATAGTTCACTCCGAATCTGTTGTTGGTCCTAATGTTCGTATTGGCTCTGGAACTGTTGTTGGCCCTTCTGTCACAATTGCCCATTCAACAAAAATAGGGTTTAACGNCGCACTTAGTAATTGCTGTATAGGTGATTCATGTGTAATTCACAATGGAGTCTGCATTGGTCAAGATGGGTTTGGATTTTATGTGGATGGCGATGGTAAGATGATAAAGAAGCCTCAGATGTTGAATGTTATAATAGGGAACCATGTGGAAATTGGTGCAAATACATGCATTGACAGGGGCAGCTGGAGGGATACAGTTATTGGGGACAATTCGAAGATAGATAATTTAGTTCAGATTGGCCATAATGTAGTTGTTGGGAAGAATTGTATGCTTTGTGGACAAGTTGGGATTGCAGGTTCAGCAACCATAGGAGATTATGTGACGATGGGAGGAAGGGTTGCAGTGCGAGATCATGTATCCATTGTCTCAAAGGTTCGGCTTGCCGCAGCAAGTTGTGTGACCAAGGACATCAAAGAGCCTGGGGACTATGGTGGCTTTCCAGCTGTTTCAATTCANGAATGGCGGAGACAGGTTGCCAGAAGTTGTCGGACACCGGCNAGAAGGAATCCTTAAAGTCAGTAAAATATATTTTGGTATGTAGTTTGTGAATTCTGAGTAATTTTCTCAGCTGGAAGCACATTTTGGTGTAGTAATTTCCAATGAATTGTCTAGCAGTGGAAAACTATGCAAGGGATTAACACCGAATACTTAAGNACTGAGATCAGTATGTAGTGAACAGAGTTTTTACATTTTAGTGCTAAACGAGTCGATGAATCCGACCCGTACAAAAGAACATGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00697	65831	68812	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009245 lipid A biosynthetic process

molecular_function
GO:0016410 N-acyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000697s00030027.1	PF00132.19	Hexapep	106	135	7.70E-05
Glyur000697s00030027.1	PF00132.19	Hexapep	207	242	4.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.441
SRR1783600	control	3.788
SRR1783602	moderate drought stress	3.804
SRR1811619	moderate drought stress	4.136

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.866
DRR006520	Root Summer glycyrrhizin high producing strain	6.161
DRR006521	Root Winter glycyrrhizin high producing strain	6.644
DRR006522	Root Winter glycyrrhizin high producing strain	6.311
DRR006523	Root Summer glycyrrhizin low producing strain	7.390
DRR006524	Root Summer glycyrrhizin low producing strain	7.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.083
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.900

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.575
SRR2868004	Drought Stress (root)	6.950
SRR2967015	Control (root)	7.271

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.054
SRR9715740	Leaf	5.295
SRR9715741	Leaf	4.211
SRR9715739	Root	3.125
SRR9715742	Root	1.970
SRR9715743	Root	2.644

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.329
SRR8749028	MeJA induced 9h	4.906
SRR8749029	MeJA induced 9h	6.801
SRR8749030	Uninduced	3.729
SRR8749031	Uninduced	1.956
SRR8749032	Uninduced	1.181

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.769
SRR8400027	Control - Root	10.829