Gene detail

Gene detail information of Glyur000696s00018524.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24330.1	9.00E-131	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
NR	XP_003552669.1	0	PREDICTED: histone-lysine N-methyltransferase ATXR6-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FNE9\|ATXR6_ARATH	2.00E-171	Histone-lysine N-methyltransferase ATXR6
trEMBL	tr\|I1N521\|I1N521_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G52260.1}

Sequence

Transcript Sequence

>Glyur000696s00018524.1
ATGGCTTCGTCGTCAACATCAACATCAACAACAACAACAGCACTGAGACGAAGAAGGACCCATGCTCCAAAGCCACCCAAACCCTCCTCCGACGATGTCGTTTGCGAGGAATGCGGCTCCGGCAAGTCCCCCTCGAAGCTGCTCCTGTGCGACAAGTGTGACCGAGGCTACCACCTCTTCTGCCTCCGACCCATCCTTCCTTCTGTCCCCAAAGCCTCCTGGTTCTGCCCCTCTTGCTCCCACTCCACCACCACTAACAAGCCCAAGTCTTTCCCTCTTGTACAGACCAAAATCATTGACTTCTTCCGAATTCAACGATCCCCCGATGCACTCCAGATCTCAAATCAAGTGGTGTCGAAAAAGAAGAGGAAGCTGCTGCCTTTCATCCCAACTGAGGATCCTAAAAGGAGATTAGAACAGATGGCATCGCTAGCTACAGCGCTGACTGCAACCAAAACAGAATTCAGCAATGAGCTTACCTACATGCCTGGAATGGCACCAAGGTCTGCTAATTGTCCTGCTCTTGAGCATGGAGGAATGCAGGTCTTATCGAAAGAAGACACTGAGACTTTAAACTTGTGCAAAAGCATGGTAGAAAGAGGTGAATGGCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACTGTAGAAGCGGATAGATCCATAAGAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGATTTTTTAAAGAATCGGGAAAACGATGATGGGGATAGCATAATGACACTTCTTTCTGCTTCTGATCCTTCGCAAACGCTTGTCATCTGTCCAGATAAACGTAGCAACATAGCACGTTTCATTAATGGCATCAATAATCACACACCGGAAGGAAAAAAGAAGCAAAACTTAAAATGCGTGAGATTTGATGTCGATGGTGAATGTCGGGTTCTTTTAATTGCTAATAGAGATATAACAAAGGGGGAAAGGTTGTACTATGACTACAATGGATACGAACATGAATATCCAACTGAACATTTTGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00696	112750	115412	+

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000696s00018524.1	PF00628.24	PHD	34	81	5.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.095
SRR1783600	control	2.093
SRR1783602	moderate drought stress	0.588
SRR1811619	moderate drought stress	0.555

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.524
DRR006520	Root Summer glycyrrhizin high producing strain	1.452
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.579
DRR006524	Root Summer glycyrrhizin low producing strain	0.529
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.486
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.487

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.945
SRR2868004	Drought Stress (root)	1.655
SRR2967015	Control (root)	2.179

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.236
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.275
SRR9715739	Root	0.000
SRR9715742	Root	0.336
SRR9715743	Root	0.178

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.847
SRR8749028	MeJA induced 9h	2.322
SRR8749029	MeJA induced 9h	0.942
SRR8749030	Uninduced	0.055
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.988
SRR8400027	Control - Root	1.635