Gene detail

Gene detail information of Glyur000696s00018521

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05310.2	2.00E-163	TLC ATP/ADP transporter
NR	AES58727.2	0	TLC ATP/ADP transporter [Medicago truncatula]
COG	NP_299027.1	2.00E-49	hypothetical protein XF1738 [Xylella fastidiosa 9a5c]
trEMBL	tr\|G7I3E2\|G7I3E2_MEDTR	0	TLC ATP/ADP transporter {ECO:0000313\|EMBL:AES58727.2}

Sequence

Transcript Sequence

>Glyur000696s00018521.1
ATGAAAGGGAAGGTTTATGTTATGTTACAGTGTGGTCGCAGCCTTACGTGGAAAGATCTAAGTCGTTCAATTGATTATCGAAAGTTCTTCTTCCTCTTTCCCCGTTACTTTGCTCCGATCCGAAACGGAAACGCTGCGATGGGGAGGTCGCGGTTTGATGCGCTCGTATCCGTGTTCGTTACGGTGCACCCGCACGAGACCTCTGCTCTGCTCCACTCCTTCTTCTGCTTCTTCTTCATTTTGAGTGCGTATTTCGTAGTTCTACCGTTGCGGGATGAAGGAGCCATCTCATTGGGGCTATCGAATCTACCTGGTCTATTTATAGGTTCCTTGTTGCTCACCGTCATTGCTGCGCCCTTTACATCACTCGTATTCTCTCTCCCTAATCTTTCCAAAAACAAGGTTCTTCAGTGTATCACTCATAGTGTTCTTTATTCTATGGCACTACTCATCAGCTGGATATTCAACGGGTTCACGGCTTTGACTCATCCCTCGAAAGAAGGGAAACTTGGTGGCCAAGGCAGTCTTGCATCATCATTTGGTTGGGATAAGCATGGATGGTTTTTTATCTCTGTCCGGATAGGATTGTTTCTTTGGGTTGCTTTGCTTAATCTAATTACAATTTCTTCAACTTGGGCAAGAGTAATTGACGTAATGGACAATGAGTCAGGTTCAAGATTATTTGGGTTTATTGGTGCTGGTGCCACACTTGGACAATTGTTTGGATCACTGTTTGCCACAGGAATGGCNTTTATTGGCCCATTCTTGCTTTTATTTGCTGCTTTGTTGATGGAACTTGCGGCACAAACATCCAGAGGGATAAATCGTGCTACATCTCATGTTGAAGAAGAATTGTCTCCCATTAGAGAATCTGATTCCAACAATGAAAACGAGGCTAATGAGATTGAGAGGACTGAACACACTCTAAAAGGTTCTCCAGAGTCATCCACTTCATTAGTGAAGCATCAAATTTGGCCCATATTAGAAGGACTATGGCTTATACTGTCATCAACTTACCTGTTGCATGTATCATTGTTNATCTGGCTCAGTGCAGTTGTCTCTTCATTCTTCTATTTTCAGAAAGTGAGTGTGATTGCCAGTACAGTTACTAGCTCTCTTGGTAGGAGAAAATTGTTTGCTCAGATAAATAGCTTTATTGCTGTTTTTATTCTTGTTGGACAACTGTCCTTGACGGGGCGCATTCTTACTGTTGCTGGGGTGACTACGGCTATATGCTCAGCTCCTTTCATTGGCCTCTTAAATTTAGTCGCTCTAGCTGTTNGGCCAGATTGGGTGGTCGTGGCTATTTGTGAGACACTGAGAAAGGTTGTTACATATGTTGTTACAAGGCCTGGAAGAGAACTTTTATTTGTTGTTGTTTCAGAGGATGAGAAGTATAAAGCAAAAGTATGCATAGATGTGTTGGTTCAAAGACTTGGAGATGCTGCAGCAGCTGGAATGTACAAAATGCTTTTTGGTACTCTCAACGGGAACCCATCAACCGTTTCCCTTTATGGCCTTCCTGTTTGTTTGTTGTGGATAGTCACGGCATTCTTTTTGGGTCGTCGGCAAGCTCAACTTTCAAAGGAAAATTTGAGAGTAAATGTACAGTGAATTATAATATGGGATAGTTTAATCAAGTGCATGAGGCCATGTTTCGAGAAAGTCGAGCCTCTAAGATAAGAGCTAACATAGTATGTTCTTCCAATTTTTTTTATAGCATTCCTTCTGTGTTAGTAATTGTTGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00696	98063	103377	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005471 ATP:ADP antiporter activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000696s00018521.1	PF03219.9	TLC	432	521	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.733
SRR1783600	control	4.682
SRR1783602	moderate drought stress	4.328
SRR1811619	moderate drought stress	4.312

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.222
DRR006520	Root Summer glycyrrhizin high producing strain	3.960
DRR006521	Root Winter glycyrrhizin high producing strain	5.699
DRR006522	Root Winter glycyrrhizin high producing strain	6.215
DRR006523	Root Summer glycyrrhizin low producing strain	4.017
DRR006524	Root Summer glycyrrhizin low producing strain	4.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.550
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.397

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.052
SRR2868004	Drought Stress (root)	13.783
SRR2967015	Control (root)	13.729

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.089
SRR9715740	Leaf	5.034
SRR9715741	Leaf	7.708
SRR9715739	Root	3.366
SRR9715742	Root	3.881
SRR9715743	Root	3.484

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.072
SRR8749028	MeJA induced 9h	11.238
SRR8749029	MeJA induced 9h	6.014
SRR8749030	Uninduced	8.521
SRR8749031	Uninduced	5.353
SRR8749032	Uninduced	4.467

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.315
SRR8400027	Control - Root	10.819