Gene detail information of Glyur000696s00018518 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24000.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004498496.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9LIQ7|PP252_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g24000, mitochondrial (Precursor) |
| trEMBL | tr|K7KYN5|K7KYN5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G48080.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00696 | 88282 | 90363 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000696s00018518.1 | PF01535.15 | PPR | 157 | 182 | 0.0027 |
| Glyur000696s00018518.1 | PF13041.1 | PPR_2 | 183 | 229 | 3.40E-09 |
| Glyur000696s00018518.1 | PF01535.15 | PPR | 258 | 280 | 0.011 |
| Glyur000696s00018518.1 | PF13041.1 | PPR_2 | 284 | 327 | 7.70E-09 |
| Glyur000696s00018518.1 | PF01535.15 | PPR | 360 | 384 | 0.021 |
| Glyur000696s00018518.1 | PF13041.1 | PPR_2 | 386 | 434 | 1.20E-11 |
| Glyur000696s00018518.1 | PF01535.15 | PPR | 461 | 484 | 0.24 |
| Glyur000696s00018518.1 | PF14432.1 | DYW_deaminase | 561 | 683 | 8.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.634 |
| SRR1783600 | control | 2.804 |
| SRR1783602 | moderate drought stress | 2.710 |
| SRR1811619 | moderate drought stress | 2.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.829 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.717 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.639 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.557 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.640 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.631 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.563 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.666 |
| SRR2868004 | Drought Stress (root) | 2.896 |
| SRR2967015 | Control (root) | 2.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.384 |
| SRR9715740 | Leaf | 2.286 |
| SRR9715741 | Leaf | 1.447 |
| SRR9715739 | Root | 6.862 |
| SRR9715742 | Root | 3.500 |
| SRR9715743 | Root | 3.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.063 |
| SRR8749028 | MeJA induced 9h | 3.096 |
| SRR8749029 | MeJA induced 9h | 1.632 |
| SRR8749030 | Uninduced | 1.008 |
| SRR8749031 | Uninduced | 0.375 |
| SRR8749032 | Uninduced | 0.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.185 |
| SRR8400027 | Control - Root | 4.853 |