Gene detail information of Glyur000696s00018517 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53550.2 | 0 | YELLOW STRIPE like 3 |
| NR | KHN19530.1 | 0 | Metal-nicotianamine transporter YSL3 [Glycine soja] |
| COG | YP_004271220.1 | 3.00E-34 | oligopeptide transporter [Planctomyces brasiliensis DSM 5305] |
| Swissprot | tr|Q2EF88|YSL3_ARATH | 0 | Metal-nicotianamine transporter YSL3 |
| trEMBL | tr|I1JYL9|I1JYL9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00696 | 75366 | 79161 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000696s00018517.1 | PF03169.10 | OPT | 45 | 665 | 1.20E-126 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.942 |
| SRR1783600 | control | 1.925 |
| SRR1783602 | moderate drought stress | 0.510 |
| SRR1811619 | moderate drought stress | 0.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.492 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.276 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.263 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.002 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.103 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.890 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.545 |
| SRR2868004 | Drought Stress (root) | 3.847 |
| SRR2967015 | Control (root) | 3.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.779 |
| SRR9715740 | Leaf | 0.258 |
| SRR9715741 | Leaf | 0.637 |
| SRR9715739 | Root | 0.248 |
| SRR9715742 | Root | 1.841 |
| SRR9715743 | Root | 1.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.822 |
| SRR8749028 | MeJA induced 9h | 1.975 |
| SRR8749029 | MeJA induced 9h | 1.910 |
| SRR8749030 | Uninduced | 1.491 |
| SRR8749031 | Uninduced | 0.914 |
| SRR8749032 | Uninduced | 1.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.347 |
| SRR8400027 | Control - Root | 36.116 |