Gene detail

Gene detail information of Glyur000696s00018508

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53920.1	2.00E-124	RNApolymerase sigma-subunit C
NR	XP_004498453.1	0	PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
COG	YP_007072072.1	3.00E-54	RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|O24621\|SIGC_ARATH	2.00E-148	RNA polymerase sigma factor sigC (Precursor)
trEMBL	tr\|I1MWA2\|I1MWA2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G26620.1}

Sequence

Transcript Sequence

>Glyur000696s00018508.1
GGAAAAAAAAGAGTGGAAACGAAAAATATTCCAGCCATAGCGAGGGAGATGAAGAACTGGTGGTGGAAGTGACAGCAACGCCATATCCATATCAGTTTTATGTCATTCCAATTCCTTCCCCCACTTTTCTCCGAACTTCGACGACCCCCTTTCATGGACTCTCTTCCTTTTTGCCTCACTACTGAGCGCTATGGGTCTCTGTTTTGGTTTTAGGCTAAACCCAAGGCTCAGATGTACTTCTAGTGTCCCACTTCACTCTCACTCTCCTCATTCCTTCATCAACAACTCACCCTTCTCCCTCTCTTCATCTTCTGCTGGAGGCAGGGAAATTTTTTCCANCCCTACGAGGTTATCATTGCTTTCGACAATTTATGAGGAAGGAGAGGCTTCGCAAAAGGATTTTGGAAAGGCATTCGCAGTTTCATCATCAGCGTTGGAAACGCTCGAAAACGGTTTATTGCAAACAGAAGGAANAAAGGGAAATAAAGGAAAGAGGTCACTGAGNAGTGTGCATAAAATGATTGATAACACACAGTTGCCTTTTGGAGAGTCACATTTCCGTTTGTTAATGGAGAACCTAGGTGTTTTAGAAGAGACTTTTGCTGATTCTGAAGCAGTGAGGTTGGAAAAGGATATTATATTGCAGCTGGGAAAGCTTGGAGCTCTTGAGTTATTCAACGTTTGTCTTAGAAGATCTTTCGGAACCTCACTCGCATCGGACCACGCCGACGGACTTCTTGAGCAAGTTGGAGAGAATAAGAGAGACTGCAATGTAGATGACTGTATAGGTAGAGTTGTTGTCAAGTCNAGCAAGAGAAAGGAGAACAAAACAAGAAGAAAGAGAGCATGTGTTGCCNCAGAGGCTTCCTCTCAGTCATTATTGCCTTTGAAAGCTAATCAAGAAGATCTATTAGGTTTCCCATCTTCTTTTGTAAAAAGAGAATCAAATACTAAAAATAGAAGATTGATGATTGCTAAAAGGGAGGCAGAAATGTCAAAAGGCGTGAAGGTTCTAGCTGAGTTAGAGAAAATTAGAATTGCTATAGAAGAGGNTACCGAGCAAGTAGCAAGCTTGAGTAGCTGGGCAGAAGCATCTGGAGTTGATGAGAAGGTGCTNCAGCAGCAACTGCATCATGGCTATTATTGTAGAGATGAGCTTATACGGAGTACGCGTTCCTTAGTTCTATACTTTGCCAGAAAATACAGGGGCATGGGAATAGCTTTGGAAGATTTGCTTCAGGCAGGATACATAGGTGTTCTCCGAGGAGCAGAGAGATTTGACAGTACAAGGGGGTACAGATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATGTCAAAAATGGTGGCACGATATGCTCGAGGAATCACAATTCCTTGGTCAATGAGCAGGGCAATAAATCAGATCCAGAAAGCACGAAAAACCTTGAAAAATACCTCCATGAAATACCCAGATGATTATGAAATTGCAAAGATGACAGGTCTTTCACTGGATAAAATCAGATCAGCTAGCAATTGTCTGAGAGTAGTTGCTTCAATTAATCAGAAGATGGGGGACTTTAGTGTAGAATATATGAATTATATGCCCGATACATTTATAGNGAGTCCTGAAGAGGCTGTCATGAAACAGCACATGAGAAAAGACATACATGATCTCCTCAAAGGCTTGGACTCAAGGGAAAGGCAAATACTAACCCTACGCTTTGGCCTCAATGATCACCAGCCTAGGTCTCTTGAGTATATAGGGAGGCTTTTCAAAGTCAGCAAAGAGTGGATAAGGAAAATNGAGAAAAAAGCTCTCACAAAGTTAAGGAACGAAGCAACCACCTCAAAGTTAGATTTTTATTTGGATCTGTAGTTTATCCTTGGTTTTTGGTAAAGCTTCAGTAGCATCTTCATTNCACCTGTGCATACGAGGGATGTGTACAAACTCTTAGTCCAGAATTGGTTATGGTGCATTGTGTATCAAATGAAGTTCTTTAACGGTTTCTAGCTGGAAAAGGATTATCAGTTGTTGCCAGTGCAGCATTTCACCACACAAAAGATATTTTGACTACCCGGAAAAGAGCCTCAAACTCAACAATGTTGATGATCTTCCGGTTTCTTTTCTGGTCATCCTTGATTGTATAATAATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTGTATCTATTATTGTTTTTTGGTGTGGCCTTGGGAATAAATGATTTAAGCTGCCTCTGAAATAGTTTTTGTTTTTGGGACCGGTAGGAGGCTTGTATTCTTTTGCAAAAGATCTTGATTCTATTAAGATCCGTGCTAGTATTATACTATTATATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00696	32617	37349	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000696s00018508.1	PF04542.9	Sigma70_r2	323	391	5.50E-14
Glyur000696s00018508.1	PF04545.11	Sigma70_r4	490	543	2.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.084
SRR1783600	control	4.052
SRR1783602	moderate drought stress	5.614
SRR1811619	moderate drought stress	5.475

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.133
DRR006520	Root Summer glycyrrhizin high producing strain	8.038
DRR006521	Root Winter glycyrrhizin high producing strain	6.726
DRR006522	Root Winter glycyrrhizin high producing strain	6.442
DRR006523	Root Summer glycyrrhizin low producing strain	7.996
DRR006524	Root Summer glycyrrhizin low producing strain	7.754
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.335
SRR2868004	Drought Stress (root)	6.448
SRR2967015	Control (root)	6.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.153
SRR9715740	Leaf	40.987
SRR9715741	Leaf	22.810
SRR9715739	Root	0.745
SRR9715742	Root	3.393
SRR9715743	Root	3.158

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.922
SRR8749028	MeJA induced 9h	4.523
SRR8749029	MeJA induced 9h	1.970
SRR8749030	Uninduced	1.242
SRR8749031	Uninduced	0.474
SRR8749032	Uninduced	0.511

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.521
SRR8400027	Control - Root	6.673